Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NQZ84_RS06860 Genome accession   NZ_CP102094
Coordinates   1400876..1402678 (-) Length   600 a.a.
NCBI ID   WP_074414178.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1395876..1407678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS06835 (NQZ84_06835) - 1397167..1397652 (-) 486 WP_024408715.1 LURP-one-related/scramblase family protein -
  NQZ84_RS06840 (NQZ84_06840) prsA 1398015..1399016 (-) 1002 WP_024408714.1 peptidylprolyl isomerase PrsA -
  NQZ84_RS06845 (NQZ84_06845) - 1399078..1399797 (-) 720 WP_044671062.1 O-methyltransferase -
  NQZ84_RS06850 (NQZ84_06850) - 1399872..1400420 (-) 549 WP_024385841.1 DUF6630 family protein -
  NQZ84_RS06855 (NQZ84_06855) - 1400431..1400874 (-) 444 WP_014637769.1 hypothetical protein -
  NQZ84_RS06860 (NQZ84_06860) pepF 1400876..1402678 (-) 1803 WP_074414178.1 oligoendopeptidase F Regulator
  NQZ84_RS06865 (NQZ84_06865) HI0659 1402788..1403087 (-) 300 WP_044670992.1 helix-turn-helix domain-containing protein Machinery gene
  NQZ84_RS06870 (NQZ84_06870) - 1403077..1403442 (-) 366 WP_172107642.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NQZ84_RS06875 (NQZ84_06875) coiA 1403486..1404439 (-) 954 WP_257048379.1 competence protein CoiA Machinery gene
  NQZ84_RS06880 (NQZ84_06880) metG 1404500..1406503 (-) 2004 WP_257048381.1 methionine--tRNA ligase -
  NQZ84_RS06885 (NQZ84_06885) - 1406616..1407008 (-) 393 WP_257048383.1 hypothetical protein -
  NQZ84_RS06890 (NQZ84_06890) - 1407091..1407231 (+) 141 WP_257048385.1 hypothetical protein -
  NQZ84_RS06895 (NQZ84_06895) - 1407207..1407656 (-) 450 WP_257048387.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69138.23 Da        Isoelectric Point: 4.4898

>NTDB_id=714301 NQZ84_RS06860 WP_074414178.1 1400876..1402678(-) (pepF) [Streptococcus suis strain 12RC1]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTTISYEDALK
KCQETLEIFGEDYSAIVKEAFENCWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=714301 NQZ84_RS06860 WP_074414178.1 1400876..1402678(-) (pepF) [Streptococcus suis strain 12RC1]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACCATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTATCACAAGAGGTAGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACTCTGCAATCTAATGTTAAGGTCAAT
AACCTGAAAGCACGTTTACGGAAGTACGACTCAGCTCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGAAGCTGTAAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCACGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATCGTAAAAGAAGCCTTCGAAAACTGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCACTCTTCTTAGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGTCAGACTCAATTTGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGATAAAGAAAACTATCTCAACTACCTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697