Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NF398_RS07500 Genome accession   NZ_CP102087
Coordinates   1525980..1526609 (-) Length   209 a.a.
NCBI ID   WP_002469716.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain K1-2-2-23     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520980..1531609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF398_RS07470 - 1521336..1521866 (-) 531 WP_023350032.1 acyl-CoA thioesterase -
  NF398_RS07475 - 1521968..1523209 (-) 1242 WP_023350031.1 aminopeptidase -
  NF398_RS07480 - 1523223..1523429 (-) 207 WP_002435959.1 DUF1128 domain-containing protein -
  NF398_RS07485 - 1523570..1524034 (+) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  NF398_RS07490 - 1524041..1524325 (+) 285 WP_002435890.1 hypothetical protein -
  NF398_RS07495 - 1524662..1525915 (+) 1254 WP_002435884.1 YihY/virulence factor BrkB family protein -
  NF398_RS07500 vraR 1525980..1526609 (-) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  NF398_RS07505 vraS 1526599..1527645 (-) 1047 WP_002435929.1 sensor histidine kinase Regulator
  NF398_RS07510 liaF 1527642..1528343 (-) 702 WP_002435891.1 cell wall-active antibiotics response protein LiaF -
  NF398_RS07515 - 1528358..1528744 (-) 387 WP_002453601.1 hypothetical protein -
  NF398_RS07520 map 1528889..1529644 (-) 756 WP_002435911.1 type I methionyl aminopeptidase -
  NF398_RS07525 - 1529818..1530807 (+) 990 WP_002435886.1 aromatic acid exporter family protein -
  NF398_RS07530 - 1530885..1531427 (-) 543 WP_023350030.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23645.28 Da        Isoelectric Point: 4.8997

>NTDB_id=714229 NF398_RS07500 WP_002469716.1 1525980..1526609(-) (vraR) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
MAIKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPHIRVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTYQGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=714229 NF398_RS07500 WP_002469716.1 1525980..1526609(-) (vraR) [Staphylococcus capitis subsp. capitis strain K1-2-2-23]
ATGGCGATTAAAGTATTGTTTGTTGATGACCATGAAATGGTTAGAATTGGTATTTCAAGCTATCTATCTACACAACAGGA
TATTGAAGTAGTTGGAGAAGGTGCTTCTGGTAAAGAAGCTATCGAAAAAGCCCATGAGTTGAAACCAGATTTAATTTTAA
TGGATTTACTTATGGATGATATGGATGGTGTAGAAGCTACTACTGAAATTAAAAAGGATTTACCTCACATAAGAGTAGTA
ATGTTAACAAGCTTTATCGAGGATAAAGAAGTTTATCGAGCATTAGATGCTGGGGTAGATAGTTATATCTTAAAAACGAC
TAGTGCGAGTGACATTGCTGACGCGGTACGTAAAACATATCAAGGGGAATCTGTTTTTGAACCAGAAGTACTTGTAAAAA
TGAGAAACCGCATGAAAAAACGTGCTGAGTTATATGAAATGCTTACAGAGCGTGAAATGGAAATTTTATTATTAATTGCC
AAAGGTTACTCTAACCAAGAAATTGCTAGCGCCTCTCATATCACTATTAAAACTGTTAAAACACACGTAAGTAATATATT
GAGTAAGTTAGAAGTTCAAGATAGAACTCAAGCTGTTATTTATGCTTTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364