Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NL417_RS00910 Genome accession   NZ_CP116916
Coordinates   34208..34798 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain MLI023K2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 29208..39798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL417_RS00875 (NL417_000875) yidF 29324..29821 (+) 498 WP_187770361.1 radical SAM protein -
  NL417_RS00880 (NL417_000880) emrD 29829..31013 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  NL417_RS00885 (NL417_000885) ysdE 31095..31169 (+) 75 WP_211180519.1 protein YsdE -
  NL417_RS00890 (NL417_000890) tisB 31293..31382 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  NL417_RS00895 (NL417_000895) ivbL 31947..32045 (+) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  NL417_RS00900 (NL417_000900) ilvB 32151..33839 (+) 1689 WP_000168464.1 acetolactate synthase large subunit -
  NL417_RS00905 (NL417_000905) ilvN 33843..34133 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  NL417_RS00910 (NL417_000910) letA 34208..34798 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  NL417_RS00915 (NL417_000915) uhpB 34798..36300 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  NL417_RS00920 (NL417_000920) uhpC 36310..37629 (+) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  NL417_RS00925 (NL417_000925) uhpT 37767..39158 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=714184 NL417_RS00910 WP_000633668.1 34208..34798(+) (letA) [Escherichia coli strain MLI023K2]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=714184 NL417_RS00910 WP_000633668.1 34208..34798(+) (letA) [Escherichia coli strain MLI023K2]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378