Detailed information NTG0714042

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: LOY12_RS05770
• Genome accession: NZ_CP116909
• Coordinates: 1095209..1095811 (+)
• Length: 200 a.a.
• NCBI ID: WP_054194454.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain AATYW
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1090209..1100811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY12_RS05730 (LOY12_005730)	-	1090225..1090344 (+)	120	WP_000840602.1	hypothetical protein	-
LOY12_RS05735 (LOY12_005735)	mreC	1090543..1091385 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
LOY12_RS05740 (LOY12_005740)	mreD	1091385..1091915 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
LOY12_RS05745 (LOY12_005745)	rplU	1092151..1092459 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
LOY12_RS05750 (LOY12_005750)	-	1092465..1092785 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LOY12_RS05755 (LOY12_005755)	rpmA	1092797..1093081 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
LOY12_RS05760 (LOY12_005760)	obgE	1093435..1094727 (+)	1293	WP_089430304.1	GTPase ObgE	-
LOY12_RS05765 (LOY12_005765)	-	1094740..1095195 (+)	456	WP_000368902.1	ACT domain-containing protein	-
LOY12_RS05770 (LOY12_005770)	ruvA	1095209..1095811 (+)	603	WP_054194454.1	Holliday junction branch migration protein RuvA	Machinery gene
LOY12_RS05775 (LOY12_005775)	ruvB	1095843..1096847 (+)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LOY12_RS05780 (LOY12_005780)	queA	1096849..1097874 (+)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LOY12_RS05785 (LOY12_005785)	tgt	1097897..1099036 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
LOY12_RS05790 (LOY12_005790)	yajC	1099055..1099315 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22315.52 Da
• Isoelectric Point: 6.1244

>NTDB_id=714042 LOY12_RS05770 WP_054194454.1 1095209..1095811(+) (ruvA) [Staphylococcus aureus strain AATYW]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVFIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=714042 LOY12_RS05770 WP_054194454.1 1095209..1095811(+) (ruvA) [Staphylococcus aureus strain AATYW]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTTATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.719	99.5	0.435