Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K6J71_RS03995 Genome accession   NZ_AP018783
Coordinates   785723..786415 (+) Length   230 a.a.
NCBI ID   WP_005666688.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-3 isolate 15H03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780723..791415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J71_RS03975 (CHBNV3_07640) ampD 782003..782554 (-) 552 WP_005666680.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K6J71_RS03980 (CHBNV3_07650) pilA 782669..783118 (+) 450 WP_005666683.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K6J71_RS03985 (CHBNV3_07660) pilB 783115..784509 (+) 1395 WP_005666685.1 GspE/PulE family protein Machinery gene
  K6J71_RS03990 (CHBNV3_07670) pilC 784506..785726 (+) 1221 WP_005666687.1 type II secretion system F family protein Machinery gene
  K6J71_RS03995 (CHBNV3_07680) pilD 785723..786415 (+) 693 WP_005666688.1 A24 family peptidase Machinery gene
  K6J71_RS04000 (CHBNV3_07690) rho 786470..787732 (-) 1263 WP_005666690.1 transcription termination factor Rho -
  K6J71_RS04005 (CHBNV3_07700) metJ 787979..788296 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  K6J71_RS04010 (CHBNV3_07710) cueR 788310..788696 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  K6J71_RS04015 (CHBNV3_07720) - 788773..788979 (+) 207 WP_005666692.1 heavy-metal-associated domain-containing protein -
  K6J71_RS04020 (CHBNV3_07730) - 789065..789271 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  K6J71_RS04025 (CHBNV3_07740) - 789345..789551 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26779.80 Da        Isoelectric Point: 8.8544

>NTDB_id=71397 K6J71_RS03995 WP_005666688.1 785723..786415(+) (pilD) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MIYFAMFLLGGIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=71397 K6J71_RS03995 WP_005666688.1 785723..786415(+) (pilD) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGATTTACTTCGCAATGTTTTTATTAGGCGGCATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGTTCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGGCGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTGTTATTAGCTTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCAGTCATCATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90.435

100

0.904
  pilD Haemophilus influenzae Rd KW20

90

100

0.9

Multiple sequence alignment