NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	PPM34_RS12750	Genome accession	NZ_CP116869
Coordinates	2473802..2474407 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis subsp. subtilis strain MGP001
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2468802..2479407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPM34_RS12720	-	2469615..2470004 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
PPM34_RS12725	yajC	2470061..2470327 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
PPM34_RS12730	tgt	2470364..2471509 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
PPM34_RS12735	queA	2471536..2472564 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
PPM34_RS12740	yrzS	2472594..2472794 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
PPM34_RS12745	ruvB	2472787..2473791 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PPM34_RS12750	ruvA	2473802..2474407 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
PPM34_RS12755	bofC	2474546..2475058 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
PPM34_RS12760	csbX	2475106..2476413 (-)	1308	WP_003246197.1	MFS transporter	-
PPM34_RS12765	iolG	2476484..2477509 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
PPM34_RS12770	yrzF	2477747..2478394 (+)	648	WP_003246159.1	phosphotransferase	-
PPM34_RS12775	-	2478440..2478562 (-)	123	WP_003229707.1	hypothetical protein	-
PPM34_RS12780	yrzH	2478647..2478937 (+)	291	WP_003246047.1	DUF5412 family protein	-
PPM34_RS12785	-	2478944..2479084 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=713723 PPM34_RS12750 WP_003229717.1 2473802..2474407(-) (ruvA) [Bacillus subtilis subsp. subtilis strain MGP001]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=713723 PPM34_RS12750 WP_003229717.1 2473802..2474407(-) (ruvA) [Bacillus subtilis subsp. subtilis strain MGP001]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0713723