Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NPS16_RS02005 Genome accession   NZ_CP101986
Coordinates   412837..413871 (+) Length   344 a.a.
NCBI ID   WP_002271784.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 407837..418871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS01980 (NPS16_01980) tsaE 409171..409614 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NPS16_RS01985 (NPS16_01985) brpA 409945..411165 (+) 1221 WP_258969058.1 biofilm formation/cell division transcriptional regulator BrpA -
  NPS16_RS01990 (NPS16_01990) - 411335..411628 (-) 294 WP_002265649.1 hypothetical protein -
  NPS16_RS01995 (NPS16_01995) - 411625..412044 (-) 420 WP_002262609.1 HIT family protein -
  NPS16_RS02000 (NPS16_02000) pptA 412109..412834 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  NPS16_RS02005 (NPS16_02005) pptB 412837..413871 (+) 1035 WP_002271784.1 ABC transporter permease Regulator
  NPS16_RS02010 (NPS16_02010) ccrZ 413930..414712 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  NPS16_RS02015 (NPS16_02015) trmB 414722..415357 (+) 636 WP_002267542.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NPS16_RS02025 (NPS16_02025) rimP 415629..416120 (+) 492 WP_002271786.1 ribosome maturation factor RimP -
  NPS16_RS02030 (NPS16_02030) nusA 416156..417349 (+) 1194 WP_002265654.1 transcription termination factor NusA -
  NPS16_RS02035 (NPS16_02035) rnpM 417367..417663 (+) 297 WP_002263922.1 RNase P modulator RnpM -
  NPS16_RS02040 (NPS16_02040) - 417656..417958 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  NPS16_RS10105 - 417979..418185 (+) 207 Protein_365 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40582.06 Da        Isoelectric Point: 10.6270

>NTDB_id=713633 NPS16_RS02005 WP_002271784.1 412837..413871(+) (pptB) [Streptococcus mutans strain COCC33-14]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWANLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRIILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=713633 NPS16_RS02005 WP_002271784.1 412837..413871(+) (pptB) [Streptococcus mutans strain COCC33-14]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAGCGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGGCTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTATTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-155)

Bacterial ABC transporter protein EcsB (EcsB)

(157-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515
  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509