Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NPS16_RS02000 Genome accession   NZ_CP101986
Coordinates   412109..412834 (+) Length   241 a.a.
NCBI ID   WP_002262608.1    Uniprot ID   A0AAX1K0Q1
Organism   Streptococcus mutans strain COCC33-14     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 407109..417834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS01975 (NPS16_01975) - 407612..409042 (+) 1431 WP_002267778.1 NCS2 family permease -
  NPS16_RS01980 (NPS16_01980) tsaE 409171..409614 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NPS16_RS01985 (NPS16_01985) brpA 409945..411165 (+) 1221 WP_258969058.1 biofilm formation/cell division transcriptional regulator BrpA -
  NPS16_RS01990 (NPS16_01990) - 411335..411628 (-) 294 WP_002265649.1 hypothetical protein -
  NPS16_RS01995 (NPS16_01995) - 411625..412044 (-) 420 WP_002262609.1 HIT family protein -
  NPS16_RS02000 (NPS16_02000) pptA 412109..412834 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  NPS16_RS02005 (NPS16_02005) pptB 412837..413871 (+) 1035 WP_002271784.1 ABC transporter permease Regulator
  NPS16_RS02010 (NPS16_02010) ccrZ 413930..414712 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  NPS16_RS02015 (NPS16_02015) trmB 414722..415357 (+) 636 WP_002267542.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NPS16_RS02025 (NPS16_02025) rimP 415629..416120 (+) 492 WP_002271786.1 ribosome maturation factor RimP -
  NPS16_RS02030 (NPS16_02030) nusA 416156..417349 (+) 1194 WP_002265654.1 transcription termination factor NusA -
  NPS16_RS02035 (NPS16_02035) rnpM 417367..417663 (+) 297 WP_002263922.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26686.26 Da        Isoelectric Point: 4.9888

>NTDB_id=713632 NPS16_RS02000 WP_002262608.1 412109..412834(+) (pptA) [Streptococcus mutans strain COCC33-14]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=713632 NPS16_RS02000 WP_002262608.1 412109..412834(+) (pptA) [Streptococcus mutans strain COCC33-14]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAACATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACACCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCTTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.987

99.17

0.763
  pptA Streptococcus salivarius strain HSISS4

76.569

99.17

0.759