Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NPS17_RS05305 Genome accession   NZ_CP101985
Coordinates   1170306..1170995 (-) Length   229 a.a.
NCBI ID   WP_002268159.1    Uniprot ID   A0AAX1K3M3
Organism   Streptococcus mutans strain COCC33-14R     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165306..1175995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS05275 (NPS17_05275) - 1165580..1166338 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  NPS17_RS05280 (NPS17_05280) - 1166328..1166606 (-) 279 WP_002286915.1 UPF0223 family protein -
  NPS17_RS05285 (NPS17_05285) spx 1166599..1167012 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  NPS17_RS05290 (NPS17_05290) - 1167073..1167993 (-) 921 WP_082999546.1 bifunctional riboflavin kinase/FAD synthetase -
  NPS17_RS05295 (NPS17_05295) truB 1168024..1168905 (-) 882 WP_002274217.1 tRNA pseudouridine(55) synthase TruB -
  NPS17_RS05300 (NPS17_05300) scnK 1168998..1170305 (-) 1308 WP_258968807.1 sensor histidine kinase KdpD Regulator
  NPS17_RS05305 (NPS17_05305) scnR 1170306..1170995 (-) 690 WP_002268159.1 response regulator transcription factor Regulator
  NPS17_RS05310 (NPS17_05310) - 1171170..1172078 (+) 909 WP_002286912.1 ABC transporter ATP-binding protein -
  NPS17_RS05315 (NPS17_05315) - 1172078..1172818 (+) 741 WP_002264497.1 ABC transporter permease -
  NPS17_RS05320 (NPS17_05320) - 1172815..1173543 (+) 729 WP_082999544.1 ABC transporter permease -
  NPS17_RS05325 (NPS17_05325) - 1173662..1175026 (-) 1365 WP_002279689.1 DUF438 domain-containing protein -
  NPS17_RS05330 (NPS17_05330) - 1175026..1175259 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26264.61 Da        Isoelectric Point: 6.9650

>NTDB_id=713579 NPS17_RS05305 WP_002268159.1 1170306..1170995(-) (scnR) [Streptococcus mutans strain COCC33-14R]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=713579 NPS17_RS05305 WP_002268159.1 1170306..1170995(-) (scnR) [Streptococcus mutans strain COCC33-14R]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTATCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.69

100

0.987
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367