Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NPS18_RS02055 Genome accession   NZ_CP101984
Coordinates   387377..388411 (+) Length   344 a.a.
NCBI ID   WP_002279713.1    Uniprot ID   Q8DVQ6
Organism   Streptococcus mutans strain UA-159     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 382377..393411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS02030 (NPS18_02030) tsaE 383711..384154 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NPS18_RS02035 (NPS18_02035) brpA 384485..385705 (+) 1221 WP_214495087.1 biofilm formation/cell division transcriptional regulator BrpA -
  NPS18_RS02040 (NPS18_02040) - 385875..386168 (-) 294 WP_002268777.1 hypothetical protein -
  NPS18_RS02045 (NPS18_02045) - 386165..386584 (-) 420 WP_002262609.1 HIT family protein -
  NPS18_RS02050 (NPS18_02050) pptA 386649..387374 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  NPS18_RS02055 (NPS18_02055) pptB 387377..388411 (+) 1035 WP_002279713.1 ABC transporter permease Regulator
  NPS18_RS02060 (NPS18_02060) ccrZ 388470..389252 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  NPS18_RS02065 (NPS18_02065) trmB 389262..389897 (+) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NPS18_RS02075 (NPS18_02075) rimP 390169..390660 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  NPS18_RS02080 (NPS18_02080) nusA 390696..391889 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  NPS18_RS02085 (NPS18_02085) rnpM 391907..392203 (+) 297 WP_002263922.1 RNase P modulator RnpM -
  NPS18_RS02090 (NPS18_02090) - 392196..392498 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  NPS18_RS10120 - 392519..392614 (+) 96 Protein_374 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40572.02 Da        Isoelectric Point: 10.6624

>NTDB_id=713484 NPS18_RS02055 WP_002279713.1 387377..388411(+) (pptB) [Streptococcus mutans strain UA-159]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDHQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=713484 NPS18_RS02055 WP_002279713.1 387377..388411(+) (pptB) [Streptococcus mutans strain UA-159]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGTAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATCATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(157-328)

Bacterial ABC transporter protein EcsB (EcsB)

(3-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.163

100

0.512
  pptB Streptococcus thermophilus LMD-9

50.581

100

0.506