Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NP434_RS19040 Genome accession   NZ_CP101936
Coordinates   3716701..3716820 (+) Length   39 a.a.
NCBI ID   WP_085185514.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3711701..3721820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS19020 (NP434_19020) albG 3711865..3712566 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NP434_RS19025 (NP434_19025) ywhL 3712572..3713948 (-) 1377 WP_256683050.1 YncE family protein -
  NP434_RS19030 (NP434_19030) ywhK 3713987..3715342 (-) 1356 WP_015250986.1 YncE family protein -
  NP434_RS19035 (NP434_19035) rapF 3715572..3716717 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  NP434_RS19040 (NP434_19040) phrF 3716701..3716820 (+) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  NP434_RS19045 (NP434_19045) - 3716918..3717380 (+) 463 Protein_3698 YbaK/EbsC family protein -
  NP434_RS19050 (NP434_19050) speB 3717412..3718284 (-) 873 WP_256683051.1 agmatinase -
  NP434_RS19055 (NP434_19055) speE 3718345..3719175 (-) 831 WP_003227543.1 spermidine synthase -
  NP434_RS19060 (NP434_19060) pbpG 3719378..3721453 (+) 2076 WP_256683052.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4259.20 Da        Isoelectric Point: 10.4997

>NTDB_id=713273 NP434_RS19040 WP_085185514.1 3716701..3716820(+) (phrF) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MKLKSKLLLFCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=713273 NP434_RS19040 WP_085185514.1 3716701..3716820(+) (phrF) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGAAATTGAAGTCTAAACTATTACTCTTTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487