Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NP436_RS12675 Genome accession   NZ_CP101932
Coordinates   2359915..2360250 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. natto strain BGSC 27E1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354915..2365250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP436_RS12655 (NP436_12655) gcvT 2355507..2356595 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  NP436_RS12660 (NP436_12660) hepAA 2357037..2358710 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  NP436_RS12665 (NP436_12665) yqhG 2358731..2359525 (+) 795 WP_014480249.1 YqhG family protein -
  NP436_RS12670 (NP436_12670) sinI 2359708..2359881 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NP436_RS12675 (NP436_12675) sinR 2359915..2360250 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NP436_RS12680 (NP436_12680) tasA 2360343..2361128 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  NP436_RS12685 (NP436_12685) sipW 2361192..2361764 (-) 573 WP_003230181.1 signal peptidase I SipW -
  NP436_RS12690 (NP436_12690) tapA 2361748..2362509 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NP436_RS12695 (NP436_12695) yqzG 2362781..2363107 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NP436_RS12700 (NP436_12700) spoIITA 2363149..2363328 (-) 180 WP_014480252.1 YqzE family protein -
  NP436_RS12705 (NP436_12705) comGG 2363399..2363773 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NP436_RS12710 (NP436_12710) comGF 2363774..2364157 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  NP436_RS12715 (NP436_12715) comGE 2364183..2364530 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NP436_RS12720 (NP436_12720) comGD 2364514..2364945 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NP436_RS12725 (NP436_12725) comGC 2364935..2365231 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=713161 NP436_RS12675 WP_003226345.1 2359915..2360250(+) (sinR) [Bacillus subtilis subsp. natto strain BGSC 27E1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=713161 NP436_RS12675 WP_003226345.1 2359915..2360250(+) (sinR) [Bacillus subtilis subsp. natto strain BGSC 27E1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1