Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CHBNTHi_RS03340 Genome accession   NZ_AP018781
Coordinates   662173..662970 (+) Length   265 a.a.
NCBI ID   WP_011272050.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657173..667970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS03320 (CHBNV1_06280) recR 657347..657949 (-) 603 WP_005626527.1 recombination mediator RecR -
  CHBNTHi_RS03325 (CHBNV1_06290) - 658080..658409 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CHBNTHi_RS03330 (CHBNV1_06300) - 658562..659407 (-) 846 WP_005666516.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CHBNTHi_RS03335 (CHBNV1_06310) - 659480..662074 (-) 2595 WP_110437668.1 penicillin-binding protein 1A -
  CHBNTHi_RS03340 (CHBNV1_06320) comA 662173..662970 (+) 798 WP_011272050.1 pilus assembly protein PilM Machinery gene
  CHBNTHi_RS03345 (CHBNV1_06330) comB 662971..663477 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  CHBNTHi_RS03350 (CHBNV1_06340) comC 663474..663995 (+) 522 WP_011272048.1 competence protein ComC Machinery gene
  CHBNTHi_RS03355 (CHBNV1_06350) comD 663992..664405 (+) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  CHBNTHi_RS03360 (CHBNV1_06360) comE 664415..665752 (+) 1338 WP_110437669.1 type IV pilus secretin PilQ Machinery gene
  CHBNTHi_RS03365 (CHBNV1_06370) - 665765..666451 (+) 687 WP_110437670.1 ComF family protein -
  CHBNTHi_RS03370 (CHBNV1_06380) nfuA 666527..667123 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31392.66 Da        Isoelectric Point: 6.2334

>NTDB_id=71313 CHBNTHi_RS03340 WP_011272050.1 662173..662970(+) (comA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLNELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71313 CHBNTHi_RS03340 WP_011272050.1 662173..662970(+) (comA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AAATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
CTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

100

100

1
  comA Haemophilus influenzae Rd KW20

96.226

100

0.962

Multiple sequence alignment