Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NP432_RS12330 Genome accession   NZ_CP101931
Coordinates   2426878..2427948 (-) Length   356 a.a.
NCBI ID   WP_015714258.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC b98af     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2421878..2432948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS12285 (NP432_12285) tapA 2422356..2423117 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  NP432_RS12290 (NP432_12290) yqzG 2423389..2423715 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NP432_RS12295 (NP432_12295) spoIITA 2423757..2423936 (-) 180 WP_029726723.1 YqzE family protein -
  NP432_RS12300 (NP432_12300) comGG 2424008..2424382 (-) 375 WP_167408283.1 ComG operon protein ComGG Machinery gene
  NP432_RS12305 (NP432_12305) comGF 2424383..2424766 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NP432_RS12310 (NP432_12310) comGE 2424792..2425139 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  NP432_RS12315 (NP432_12315) comGD 2425123..2425554 (-) 432 WP_256682874.1 comG operon protein ComGD Machinery gene
  NP432_RS12320 (NP432_12320) comGC 2425544..2425840 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NP432_RS12325 (NP432_12325) comGB 2425854..2426891 (-) 1038 WP_116316545.1 comG operon protein ComGB Machinery gene
  NP432_RS12330 (NP432_12330) comGA 2426878..2427948 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  NP432_RS12335 (NP432_12335) corA 2428360..2429313 (-) 954 WP_256682875.1 magnesium transporter CorA -
  NP432_RS12340 (NP432_12340) yqhB 2429456..2430784 (+) 1329 WP_009967730.1 hemolysin family protein -
  NP432_RS12345 (NP432_12345) rsbRD 2430837..2431673 (-) 837 WP_173614187.1 RsbT co-antagonist protein RsbRD -
  NP432_RS12355 (NP432_12355) mgsR 2431897..2432277 (-) 381 WP_014477337.1 transcriptional regulator MgsR -
  NP432_RS12360 (NP432_12360) yqgY 2432509..2432754 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=713090 NP432_RS12330 WP_015714258.1 2426878..2427948(-) (comGA) [Bacillus subtilis strain BGSC b98af]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=713090 NP432_RS12330 WP_015714258.1 2426878..2427948(-) (comGA) [Bacillus subtilis strain BGSC b98af]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTCTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATTTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCCATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997