Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NP432_RS12320 Genome accession   NZ_CP101931
Coordinates   2425544..2425840 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain BGSC b98af     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2420544..2430840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP432_RS12275 (NP432_12275) tasA 2420951..2421736 (-) 786 WP_212130175.1 biofilm matrix protein TasA -
  NP432_RS12280 (NP432_12280) sipW 2421800..2422372 (-) 573 WP_003246088.1 signal peptidase I SipW -
  NP432_RS12285 (NP432_12285) tapA 2422356..2423117 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  NP432_RS12290 (NP432_12290) yqzG 2423389..2423715 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NP432_RS12295 (NP432_12295) spoIITA 2423757..2423936 (-) 180 WP_029726723.1 YqzE family protein -
  NP432_RS12300 (NP432_12300) comGG 2424008..2424382 (-) 375 WP_167408283.1 ComG operon protein ComGG Machinery gene
  NP432_RS12305 (NP432_12305) comGF 2424383..2424766 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NP432_RS12310 (NP432_12310) comGE 2424792..2425139 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  NP432_RS12315 (NP432_12315) comGD 2425123..2425554 (-) 432 WP_256682874.1 comG operon protein ComGD Machinery gene
  NP432_RS12320 (NP432_12320) comGC 2425544..2425840 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NP432_RS12325 (NP432_12325) comGB 2425854..2426891 (-) 1038 WP_116316545.1 comG operon protein ComGB Machinery gene
  NP432_RS12330 (NP432_12330) comGA 2426878..2427948 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  NP432_RS12335 (NP432_12335) corA 2428360..2429313 (-) 954 WP_256682875.1 magnesium transporter CorA -
  NP432_RS12340 (NP432_12340) yqhB 2429456..2430784 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=713088 NP432_RS12320 WP_003230162.1 2425544..2425840(-) (comGC) [Bacillus subtilis strain BGSC b98af]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=713088 NP432_RS12320 WP_003230162.1 2425544..2425840(-) (comGC) [Bacillus subtilis strain BGSC b98af]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378