Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   NP433_RS17965 Genome accession   NZ_CP101930
Coordinates   3499304..3500461 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain BGSC 10A5     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3494304..3505461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS17935 (NP433_17935) yvyF 3494558..3494977 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  NP433_RS17940 (NP433_17940) comFC 3495050..3495772 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  NP433_RS17945 (NP433_17945) comFB 3495736..3496032 (-) 297 WP_015483764.1 late competence protein ComFB -
  NP433_RS17950 (NP433_17950) comFA 3496092..3497483 (-) 1392 WP_256683017.1 ATP-dependent helicase ComFA Machinery gene
  NP433_RS17955 (NP433_17955) fakBA 3497589..3498434 (-) 846 WP_003244125.1 DegV family protein -
  NP433_RS17960 (NP433_17960) degU 3498532..3499221 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NP433_RS17965 (NP433_17965) degS 3499304..3500461 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NP433_RS17970 (NP433_17970) yvyE 3500678..3501331 (+) 654 WP_003227979.1 YigZ family protein -
  NP433_RS17975 (NP433_17975) tagV 3501331..3502506 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NP433_RS17980 (NP433_17980) tagO 3502579..3503655 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  NP433_RS17985 (NP433_17985) tuaH 3503800..3504993 (-) 1194 WP_256683504.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=713034 NP433_RS17965 WP_003227983.1 3499304..3500461(-) (degS) [Bacillus subtilis strain BGSC 10A5]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=713034 NP433_RS17965 WP_003227983.1 3499304..3500461(-) (degS) [Bacillus subtilis strain BGSC 10A5]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGTGAGCAGTCACGCCAGCAGTATGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTTATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1