Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NP433_RS17960 Genome accession   NZ_CP101930
Coordinates   3498532..3499221 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BGSC 10A5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493532..3504221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS17925 (NP433_17925) flgN 3493713..3494195 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NP433_RS17930 (NP433_17930) flgM 3494211..3494477 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NP433_RS17935 (NP433_17935) yvyF 3494558..3494977 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  NP433_RS17940 (NP433_17940) comFC 3495050..3495772 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  NP433_RS17945 (NP433_17945) comFB 3495736..3496032 (-) 297 WP_015483764.1 late competence protein ComFB -
  NP433_RS17950 (NP433_17950) comFA 3496092..3497483 (-) 1392 WP_256683017.1 ATP-dependent helicase ComFA Machinery gene
  NP433_RS17955 (NP433_17955) fakBA 3497589..3498434 (-) 846 WP_003244125.1 DegV family protein -
  NP433_RS17960 (NP433_17960) degU 3498532..3499221 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NP433_RS17965 (NP433_17965) degS 3499304..3500461 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NP433_RS17970 (NP433_17970) yvyE 3500678..3501331 (+) 654 WP_003227979.1 YigZ family protein -
  NP433_RS17975 (NP433_17975) tagV 3501331..3502506 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NP433_RS17980 (NP433_17980) tagO 3502579..3503655 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=713033 NP433_RS17960 WP_003219701.1 3498532..3499221(-) (degU) [Bacillus subtilis strain BGSC 10A5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=713033 NP433_RS17960 WP_003219701.1 3498532..3499221(-) (degU) [Bacillus subtilis strain BGSC 10A5]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1