Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NP433_RS17940 Genome accession   NZ_CP101930
Coordinates   3495050..3495772 (-) Length   240 a.a.
NCBI ID   WP_024572693.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC 10A5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3490050..3500772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS17905 (NP433_17905) fliW 3490190..3490621 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NP433_RS17910 (NP433_17910) yviE 3490642..3491217 (-) 576 WP_014481045.1 DUF6470 family protein -
  NP433_RS17915 (NP433_17915) flgL 3491264..3492160 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NP433_RS17920 (NP433_17920) flgK 3492171..3493694 (-) 1524 WP_088327073.1 flagellar hook-associated protein FlgK -
  NP433_RS17925 (NP433_17925) flgN 3493713..3494195 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NP433_RS17930 (NP433_17930) flgM 3494211..3494477 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NP433_RS17935 (NP433_17935) yvyF 3494558..3494977 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  NP433_RS17940 (NP433_17940) comFC 3495050..3495772 (-) 723 WP_024572693.1 comF operon protein ComFC Machinery gene
  NP433_RS17945 (NP433_17945) comFB 3495736..3496032 (-) 297 WP_015483764.1 late competence protein ComFB -
  NP433_RS17950 (NP433_17950) comFA 3496092..3497483 (-) 1392 WP_256683017.1 ATP-dependent helicase ComFA Machinery gene
  NP433_RS17955 (NP433_17955) fakBA 3497589..3498434 (-) 846 WP_003244125.1 DegV family protein -
  NP433_RS17960 (NP433_17960) degU 3498532..3499221 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NP433_RS17965 (NP433_17965) degS 3499304..3500461 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27505.79 Da        Isoelectric Point: 9.3154

>NTDB_id=713031 NP433_RS17940 WP_024572693.1 3495050..3495772(-) (comFC) [Bacillus subtilis strain BGSC 10A5]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=713031 NP433_RS17940 WP_024572693.1 3495050..3495772(-) (comFC) [Bacillus subtilis strain BGSC 10A5]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACGAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988