Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   PNF29_RS12065 Genome accession   NZ_CP116773
Coordinates   2257069..2257500 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM125727     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2252069..2262500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS12055 (PNF29_12055) hexA 2253560..2256136 (-) 2577 WP_272515564.1 DNA mismatch repair protein MutS Machinery gene
  PNF29_RS12060 (PNF29_12060) cotE 2256270..2256815 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  PNF29_RS12065 (PNF29_12065) ymcA 2257069..2257500 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  PNF29_RS12070 (PNF29_12070) miaB 2257502..2259031 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PNF29_RS12075 (PNF29_12075) kbl 2259179..2260357 (-) 1179 WP_106073925.1 glycine C-acetyltransferase -
  PNF29_RS12080 (PNF29_12080) tdh 2260370..2261413 (-) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  PNF29_RS12085 (PNF29_12085) spoVS 2261679..2261939 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=713028 PNF29_RS12065 WP_003231834.1 2257069..2257500(-) (ymcA) [Bacillus subtilis strain SRCM125727]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=713028 PNF29_RS12065 WP_003231834.1 2257069..2257500(-) (ymcA) [Bacillus subtilis strain SRCM125727]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1