Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NP433_RS16020 Genome accession   NZ_CP101930
Coordinates   3106687..3107352 (-) Length   221 a.a.
NCBI ID   WP_256682951.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC 10A5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3101687..3112352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS15985 (NP433_15985) mrpB 3102879..3103310 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NP433_RS15990 (NP433_15990) mrpC 3103310..3103651 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NP433_RS15995 (NP433_15995) mrpD 3103644..3105125 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NP433_RS16000 (NP433_16000) mrpE 3105131..3105607 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NP433_RS16005 (NP433_16005) mrpF 3105607..3105891 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NP433_RS16010 (NP433_16010) mnhG 3105875..3106249 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NP433_RS16015 (NP433_16015) yuxO 3106288..3106668 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NP433_RS16020 (NP433_16020) comA 3106687..3107352 (-) 666 WP_256682951.1 two-component system response regulator ComA Regulator
  NP433_RS16025 (NP433_16025) comP 3107412..3109712 (-) 2301 WP_088300729.1 histidine kinase Regulator
  NP433_RS16030 (NP433_16030) comX 3109724..3109888 (-) 165 WP_015384519.1 competence pheromone ComX -
  NP433_RS16035 (NP433_16035) - 3109901..3110761 (-) 861 WP_064671628.1 polyprenyl synthetase family protein -
  NP433_RS16040 (NP433_16040) degQ 3110946..3111086 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NP433_RS16045 (NP433_16045) - 3111308..3111433 (+) 126 WP_003228793.1 hypothetical protein -
  NP433_RS16050 (NP433_16050) - 3111547..3111915 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25028.47 Da        Isoelectric Point: 4.8102

>NTDB_id=713026 NP433_RS16020 WP_256682951.1 3106687..3107352(-) (comA) [Bacillus subtilis strain BGSC 10A5]
MSKREENRKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQ
ENPHCKIIVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDV
LTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=713026 NP433_RS16020 WP_256682951.1 3106687..3107352(-) (comA) [Bacillus subtilis strain BGSC 10A5]
GTGAGTAAAAGGGAGGAAAACAGGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAAT
TTTGGAAACGGATTCGAATTTGTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCT
CGTCATATGATCTCATTTTAATGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAA
GAGAATCCTCATTGTAAAATTATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCT
GCACGGTGCCATCAGCAAAACGGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAG
TCGATTTTGCTTACTTTAAACAGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTG
CTCACACCTAGAGAATGCCTGATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTT
AAGCAAGCGGTCCATTGAATACAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGA
TTGCGAAATCAGACGGTGTACTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-124)

Bacterial regulatory proteins, luxR family (GerE)

(159-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

96.38

0.964