Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J73_RS09265 Genome accession   NZ_AP018780
Coordinates   1866487..1866834 (-) Length   115 a.a.
NCBI ID   WP_005664263.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1861487..1871834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS09240 (CHBNIV1_17700) otnI 1861954..1862730 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  K6J73_RS09245 (CHBNIV1_17710) otnC 1862733..1863365 (-) 633 WP_118802492.1 3-oxo-tetronate 4-phosphate decarboxylase -
  K6J73_RS09250 (CHBNIV1_17720) otnK 1863362..1864603 (-) 1242 WP_074039295.1 3-oxo-tetronate kinase -
  K6J73_RS09255 (CHBNIV1_17730) ltnD 1864606..1865511 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  K6J73_RS09260 (CHBNIV1_17740) - 1865682..1866440 (+) 759 WP_005665975.1 DeoR/GlpR family DNA-binding transcription regulator -
  K6J73_RS09265 (CHBNIV1_17750) comE1/comEA 1866487..1866834 (-) 348 WP_005664263.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J73_RS09270 (CHBNIV1_17760) ispH 1867003..1867947 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J73_RS09275 (CHBNIV1_17770) lspA 1867944..1868459 (-) 516 WP_005655980.1 signal peptidase II -
  K6J73_RS09280 (CHBNIV1_17780) - 1868529..1870088 (-) 1560 WP_221253102.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12451.33 Da        Isoelectric Point: 8.0084

>NTDB_id=71297 K6J73_RS09265 WP_005664263.1 1866487..1866834(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71297 K6J73_RS09265 WP_005664263.1 1866487..1866834(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

82.143

97.391

0.8
  comEA/comE1 Glaesserella parasuis strain SC1401

57.009

93.043

0.53
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment