Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PND17_RS10200 Genome accession   NZ_CP116772
Coordinates   1766839..1767366 (-) Length   175 a.a.
NCBI ID   WP_418953154.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761839..1772366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS09255 (PND17_09255) - 1762039..1762617 (-) 579 WP_272591624.1 amino acid permease -
  PND17_RS09260 (PND17_09260) - 1762675..1762851 (+) 177 Protein_1804 CHAP domain-containing protein -
  PND17_RS09265 (PND17_09265) - 1763260..1763562 (+) 303 Protein_1805 transposase -
  PND17_RS09270 (PND17_09270) - 1763558..1763821 (-) 264 WP_272591625.1 hypothetical protein -
  PND17_RS09285 (PND17_09285) - 1764412..1764690 (-) 279 Protein_1807 23S rRNA (uracil-5-)-methyltransferase RumA -
  PND17_RS09290 (PND17_09290) - 1764686..1764961 (+) 276 Protein_1808 lysophospholipid acyltransferase family protein -
  PND17_RS09295 (PND17_09295) - 1765005..1765232 (+) 228 Protein_1809 biotin/lipoyl-containing protein -
  PND17_RS09300 (PND17_09300) - 1765504..1765782 (+) 279 Protein_1810 nitroreductase family protein -
  PND17_RS09305 (PND17_09305) - 1765738..1765998 (-) 261 WP_272591626.1 DUF4287 domain-containing protein -
  PND17_RS09310 (PND17_09310) - 1766074..1766264 (-) 191 Protein_1812 IS3 family transposase -
  PND17_RS09315 (PND17_09315) - 1766444..1766842 (+) 399 WP_272591627.1 hypothetical protein -
  PND17_RS10200 amiA3 1766839..1767366 (-) 528 WP_418953154.1 citrate lyase subunit alpha Regulator
  PND17_RS09330 (PND17_09330) - 1767383..1767652 (-) 270 Protein_1815 diphosphomevalonate decarboxylase -
  PND17_RS09335 (PND17_09335) - 1767924..1768193 (+) 270 Protein_1816 NEAT domain-containing protein -
  PND17_RS10205 - 1768486..1768797 (+) 312 WP_418953169.1 glycosyltransferase -
  PND17_RS09340 (PND17_09340) - 1768707..1768967 (+) 261 Protein_1818 polysaccharide biosynthesis C-terminal domain-containing protein -
  PND17_RS09345 (PND17_09345) - 1768965..1769231 (+) 267 Protein_1819 DUF2252 family protein -
  PND17_RS09350 (PND17_09350) grpE 1769234..1769512 (-) 279 Protein_1820 nucleotide exchange factor GrpE -
  PND17_RS09355 (PND17_09355) - 1769490..1769765 (-) 276 Protein_1821 aldo/keto reductase -
  PND17_RS09360 (PND17_09360) - 1770006..1770268 (-) 263 Protein_1822 hypothetical protein -
  PND17_RS09365 (PND17_09365) - 1770266..1770532 (+) 267 Protein_1823 hypothetical protein -
  PND17_RS09370 (PND17_09370) - 1770523..1770639 (+) 117 Protein_1824 NUDIX hydrolase -
  PND17_RS10060 - 1770648..1770776 (-) 129 Protein_1825 HD domain-containing protein -
  PND17_RS09375 (PND17_09375) - 1770780..1771031 (+) 252 Protein_1826 alpha/beta hydrolase -
  PND17_RS09380 (PND17_09380) - 1771265..1771531 (-) 267 WP_272591629.1 hypothetical protein -
  PND17_RS09400 (PND17_09400) - 1772020..1772229 (-) 210 WP_272591630.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18489.03 Da        Isoelectric Point: 4.3209

>NTDB_id=712955 PND17_RS10200 WP_418953154.1 1766839..1767366(-) (amiA3) [Streptococcus thermophilus strain strain TSGB 4141]
MKLKKILGITGVALLSVGMLAACSSKSSTSGTTYSNIYGSDPETLDYITSIMGGTKDVLTNGVDGLMEADKYGNLVPSVA
EDWCTGGSSLAVARFLRQAMLDQDIKASFALGGITNSMVELLKEGLVEKIIDVQDFDHPSAVSLGENADHYEIDANMYAS
PLSKGAVINQLDKIS

Nucleotide


Download         Length: 528 bp        

>NTDB_id=712955 PND17_RS10200 WP_418953154.1 1766839..1767366(-) (amiA3) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAACTTAAAAAAATTCTTGGAATTACGGGTGTAGCCCTTCTAAGTGTTGGTATGTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATAGTAATATTTATGGCTCAGATCCAGAAACCTTGGATTATATTACATCAATTATGGGAG
GGACAAAAGATGTTTTGACTAATGGTGTAGATGGTCTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTGTACTGGCGGCTCTTCGCTGGCTGTTGCGCGTTTTCTGCGGCAAGCGATGTTGGACCAAGACATCAAAGC
TAGTTTTGCTTTGGGTGGCATTACCAATTCAATGGTTGAATTGTTGAAGGAAGGCCTTGTCGAAAAGATTATCGATGTGC
AGGACTTTGACCATCCCTCTGCGGTTTCATTAGGCGAGAACGCAGATCATTACGAGATTGATGCTAATATGTACGCGTCA
CCGTTAAGCAAAGGTGCAGTTATCAATCAGTTAGATAAGATCAGCTAG

Domains

Predicted by InterProScan.

Citrate lyase, alpha subunit (CitF) (CitF)

(84-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

67

57.143

0.383
  amiA3 Streptococcus thermophilus LMD-9

67

57.143

0.383
  amiA Streptococcus salivarius strain HSISS4

67

57.143

0.383