Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PND17_RS07625 Genome accession   NZ_CP116772
Coordinates   1452737..1453255 (+) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   Q5M2Q4
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1447737..1458255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS07595 (PND17_07595) - 1448136..1448450 (+) 315 WP_272591614.1 hypothetical protein -
  PND17_RS07600 (PND17_07600) - 1448437..1448664 (+) 228 WP_011681629.1 hypothetical protein -
  PND17_RS07605 (PND17_07605) - 1448767..1449117 (+) 351 WP_271298420.1 hypothetical protein -
  PND17_RS07610 (PND17_07610) mutY 1449326..1450477 (-) 1152 WP_011226550.1 A/G-specific adenine glycosylase -
  PND17_RS07615 (PND17_07615) - 1451263..1452216 (-) 954 WP_011681625.1 hypothetical protein -
  PND17_RS07620 (PND17_07620) rpsF 1452435..1452725 (+) 291 WP_002951906.1 30S ribosomal protein S6 -
  PND17_RS07625 (PND17_07625) ssb 1452737..1453255 (+) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  PND17_RS07630 (PND17_07630) rpsR 1453297..1453536 (+) 240 WP_002945024.1 30S ribosomal protein S18 -
  PND17_RS07635 (PND17_07635) - 1453681..1454571 (-) 891 WP_011225623.1 RluA family pseudouridine synthase -
  PND17_RS07640 (PND17_07640) lspA 1454555..1455016 (-) 462 WP_002946082.1 signal peptidase II -
  PND17_RS07645 (PND17_07645) - 1455025..1455930 (-) 906 WP_002946084.1 LysR family transcriptional regulator -
  PND17_RS07650 (PND17_07650) - 1456046..1456270 (-) 225 WP_014621260.1 hypothetical protein -
  PND17_RS07655 (PND17_07655) - 1456416..1457012 (-) 597 WP_271298422.1 hypothetical protein -
  PND17_RS07660 (PND17_07660) - 1456996..1457292 (-) 297 WP_232086560.1 hypothetical protein -
  PND17_RS07665 (PND17_07665) - 1457356..1457619 (-) 264 WP_271298423.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=712931 PND17_RS07625 WP_002951905.1 1452737..1453255(+) (ssb) [Streptococcus thermophilus strain strain TSGB 4141]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=712931 PND17_RS07625 WP_002951905.1 1452737..1453255(+) (ssb) [Streptococcus thermophilus strain strain TSGB 4141]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAGCTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTTGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366