Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6L23_RS06770 Genome accession   NZ_CP116730
Coordinates   1376525..1378630 (+) Length   701 a.a.
NCBI ID   WP_003515741.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain FPH-AT4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371525..1383630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L23_RS06755 (G6L23_006755) - 1371807..1372151 (-) 345 WP_013636325.1 hypothetical protein -
  G6L23_RS06760 (G6L23_006760) mfd 1372525..1376022 (-) 3498 WP_174047447.1 transcription-repair coupling factor -
  G6L23_RS06765 (G6L23_006765) - 1376026..1376337 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  G6L23_RS06770 (G6L23_006770) recG 1376525..1378630 (+) 2106 WP_003515741.1 ATP-dependent DNA helicase RecG Machinery gene
  G6L23_RS06775 (G6L23_006775) - 1378643..1378915 (+) 273 WP_003515743.1 hypothetical protein -
  G6L23_RS06780 (G6L23_006780) - 1378970..1379227 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  G6L23_RS06785 (G6L23_006785) - 1379224..1379607 (+) 384 WP_035198363.1 type II toxin-antitoxin system VapC family toxin -
  G6L23_RS06790 (G6L23_006790) - 1379611..1380279 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  G6L23_RS06795 (G6L23_006795) - 1380293..1380796 (-) 504 WP_065702432.1 GNAT family N-acetyltransferase -
  G6L23_RS06800 (G6L23_006800) glmS 1380793..1382619 (-) 1827 WP_003515753.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76563.20 Da        Isoelectric Point: 7.1162

>NTDB_id=712839 G6L23_RS06770 WP_003515741.1 1376525..1378630(+) (recG) [Agrobacterium tumefaciens strain FPH-AT4]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSESENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGVNIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=712839 G6L23_RS06770 WP_003515741.1 1376525..1378630(+) (recG) [Agrobacterium tumefaciens strain FPH-AT4]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCGCCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATTCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCAGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTTTCCGAATCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCAATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAAACGCTGAAGACCCGGCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGATCCGC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTTCTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTCCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATCACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACGCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCCTTCGGCGACATGGATGTATCAAAACTCACCGAAAAACCGG
CTGGCCGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGTCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCTCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

40

97.004

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40

97.004

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.663

98.146

0.379