Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NP430_RS07410 Genome accession   NZ_CP101910
Coordinates   1649457..1651670 (+) Length   737 a.a.
NCBI ID   WP_041167829.1    Uniprot ID   -
Organism   Pseudomonas putida strain ATCC 12633     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644457..1656670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP430_RS07390 (NP430_07390) - 1646326..1646949 (+) 624 WP_016500912.1 glutathione S-transferase -
  NP430_RS07395 (NP430_07395) - 1647084..1648016 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  NP430_RS07400 (NP430_07400) - 1648013..1648792 (+) 780 WP_016500910.1 ABC transporter permease -
  NP430_RS07405 (NP430_07405) - 1648676..1649314 (-) 639 WP_016500909.1 DUF2062 domain-containing protein -
  NP430_RS07410 (NP430_07410) comA 1649457..1651670 (+) 2214 WP_041167829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NP430_RS07415 (NP430_07415) exbB 1651775..1652410 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NP430_RS07420 (NP430_07420) - 1652407..1652841 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  NP430_RS07425 (NP430_07425) lpxK 1652841..1653842 (+) 1002 WP_016500905.1 tetraacyldisaccharide 4'-kinase -
  NP430_RS07430 (NP430_07430) - 1653887..1654072 (+) 186 WP_003247142.1 Trm112 family protein -
  NP430_RS07435 (NP430_07435) kdsB 1654069..1654833 (+) 765 WP_016500904.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NP430_RS07440 (NP430_07440) - 1654833..1655297 (+) 465 WP_016500903.1 low molecular weight protein-tyrosine-phosphatase -
  NP430_RS07445 (NP430_07445) murB 1655294..1656313 (+) 1020 WP_016500902.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79617.36 Da        Isoelectric Point: 9.8382

>NTDB_id=712692 NP430_RS07410 WP_041167829.1 1649457..1651670(+) (comA) [Pseudomonas putida strain ATCC 12633]
MRTGMFALALGLLCLGFLPVLPSVGWLLALAACAAVSLFTRVWPVGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELQAAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPYGPDREAQLLARRVGGTG
TVKAGQLLAPVTGGWRDVLRQRLLAVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVVVLLVEPL
AALLPGFWLSFMAVATLVYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSVAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLWAWLVVSLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAS
AIQRGLPVRRLIGGEALEEVPLQPCASGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADHETPRIDWLQSPHHGSRSSSTEAFIRATAPHGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGQHG
EVEGMREQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=712692 NP430_RS07410 WP_041167829.1 1649457..1651670(+) (comA) [Pseudomonas putida strain ATCC 12633]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGGTGGCT
GCTAGCGCTGGCGGCCTGTGCTGCCGTCAGCTTGTTTACCCGTGTTTGGCCGGTGGGCTGCTTTCTGTTGGGCCTGTGTT
GGGCGTGCTGGTCTGCTCAGCAGGCGCTTGATGATCGCCTGGCTGCCGGCCTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCAGCCCGAACGGCGCAGGGCGTGCGCTTCGAGCTGCAGGCAGCACACTCGCGGCGGGCCGAGCT
GCCGCAACGGTTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCCGGTGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGTTGCTCAACCCCTATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGGGGCACCGGT
ACGGTAAAAGCCGGGCAACTGCTGGCGCCTGTAACCGGTGGTTGGCGCGATGTGCTGCGTCAGCGTTTGCTGGCGGTCGA
AGCCAATGGCCGGCAGGCCGCGTTGGTGGCACTGGTGCTTGGCGACGGCACAGGCTTGGCCCGGGAGGACTGGCAGACGT
TGCAAGCCACCGGCACGGTGCACCTGTTGGTGATCTCTGGCCAGCACATCGGCCTGGTGGCCGGCTTGCTGTACGGTCTG
GTCGCCGGACTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGTGCCGGTGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTCGGTGCGACGCTGCCGCTGTTGCTGGCGCTGGTCGTGGTGCTGCTGGTCGAACCGCTG
GCAGCGCTGCTGCCTGGTTTCTGGCTGTCATTTATGGCGGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGGCTAGGGGG
CTGGCGGCCTTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTGGCCACGGGGC
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAATCTTGTCGCAGTGCCTTGGGTGAGCGTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTGCTGCTGCCACTGGGCGGGGTAGGGGAGGCGTTGCTATGGCTGGCGGGGGGGCTGCTGGATGGGCTGTT
CCGGCTGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGGCGCCGGCCCTGCCATTATGGGCCTGGCTAGTGGTGA
GCCTGGGCGCTCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGCTTGGGCGGGGTGATGCTGCTGGCCTTGTGG
GTGCCCAGGGAACCGGTGCCGCACGGGCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGAGGCGAAAGCGACCTGGGGGAGCGGGTGGTGTTACCGA
CGTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCACGCGCATGCCGACCATGCGGGTGGTGCCTCG
GCCATACAGCGTGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAAGCGCTGGAAGAAGTGCCATTGCAGCCTTGTGCCAG
TGGCGAACAATGGGACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGTTCCT
GTGTGCTGTTGGTAGAGGCGCAGGGCGAACGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCTTGGCTG
GCGGACCATGAAACGCCGCGTATCGACTGGTTGCAGTCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTACTGCGCCGCATGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTTCAGGTGATGG
AGCGTTATCAGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGAGGGGGCATTGAGGTTGGTGTTGGGGCAGCATGGC
GAAGTCGAAGGTATGAGGGAGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-673)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.501

97.829

0.582
  comA Ralstonia pseudosolanacearum GMI1000

35.934

100

0.381