Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NP430_RS07415 Genome accession   NZ_CP101910
Coordinates   1651775..1652410 (+) Length   211 a.a.
NCBI ID   WP_016500907.1    Uniprot ID   A0AAP1T5P6
Organism   Pseudomonas putida strain ATCC 12633     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1646775..1657410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP430_RS07395 (NP430_07395) - 1647084..1648016 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  NP430_RS07400 (NP430_07400) - 1648013..1648792 (+) 780 WP_016500910.1 ABC transporter permease -
  NP430_RS07405 (NP430_07405) - 1648676..1649314 (-) 639 WP_016500909.1 DUF2062 domain-containing protein -
  NP430_RS07410 (NP430_07410) comA 1649457..1651670 (+) 2214 WP_041167829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NP430_RS07415 (NP430_07415) exbB 1651775..1652410 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NP430_RS07420 (NP430_07420) - 1652407..1652841 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  NP430_RS07425 (NP430_07425) lpxK 1652841..1653842 (+) 1002 WP_016500905.1 tetraacyldisaccharide 4'-kinase -
  NP430_RS07430 (NP430_07430) - 1653887..1654072 (+) 186 WP_003247142.1 Trm112 family protein -
  NP430_RS07435 (NP430_07435) kdsB 1654069..1654833 (+) 765 WP_016500904.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NP430_RS07440 (NP430_07440) - 1654833..1655297 (+) 465 WP_016500903.1 low molecular weight protein-tyrosine-phosphatase -
  NP430_RS07445 (NP430_07445) murB 1655294..1656313 (+) 1020 WP_016500902.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22874.14 Da        Isoelectric Point: 7.3616

>NTDB_id=712693 NP430_RS07415 WP_016500907.1 1651775..1652410(+) (exbB) [Pseudomonas putida strain ATCC 12633]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMNANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=712693 NP430_RS07415 WP_016500907.1 1651775..1652410(+) (exbB) [Pseudomonas putida strain ATCC 12633]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGAATGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829