Detailed information NTG0712641

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NP431_RS12095
• Genome accession: NZ_CP101905
• Coordinates: 2657789..2658658 (+)
• Length: 289 a.a.
• NCBI ID: WP_020333950.1
• Uniprot ID: A0AAN1CWE3
• Organism: Vibrio natriegens strain 14048
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2652789..2663658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP431_RS12075 (NP431_12075)	nadC	2653169..2654056 (+)	888	WP_020333946.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NP431_RS12080 (NP431_12080)	pilA	2654323..2654781 (+)	459	WP_020333947.1	pilin	Machinery gene
NP431_RS12085 (NP431_12085)	pilB	2654782..2656467 (+)	1686	WP_020333948.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NP431_RS12090 (NP431_12090)	pilC	2656498..2657721 (+)	1224	WP_020333949.1	type II secretion system F family protein	Machinery gene
NP431_RS12095 (NP431_12095)	pilD	2657789..2658658 (+)	870	WP_020333950.1	A24 family peptidase	Machinery gene
NP431_RS12100 (NP431_12100)	coaE	2658659..2659273 (+)	615	WP_020333951.1	dephospho-CoA kinase	-
NP431_RS12105 (NP431_12105)	zapD	2659300..2660040 (+)	741	WP_020333952.1	cell division protein ZapD	-
NP431_RS12110 (NP431_12110)	yacG	2660114..2660308 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
NP431_RS12115 (NP431_12115)	rplS	2660633..2660986 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
NP431_RS12120 (NP431_12120)	trmD	2661027..2661788 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NP431_RS12125 (NP431_12125)	rimM	2661816..2662364 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
NP431_RS12130 (NP431_12130)	rpsP	2662395..2662643 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32310.38 Da
• Isoelectric Point: 6.4408

>NTDB_id=712641 NP431_RS12095 WP_020333950.1 2657789..2658658(+) (pilD) [Vibrio natriegens strain 14048]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=712641 NP431_RS12095 WP_020333950.1 2657789..2658658(+) (pilD) [Vibrio natriegens strain 14048]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.194	99.654	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446