Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J60_RS09605 Genome accession   NZ_AP018778
Coordinates   1895837..1896184 (-) Length   115 a.a.
NCBI ID   WP_042603648.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1890837..1901184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS09580 (CHBNIII7_18330) otnI 1891304..1892080 (-) 777 WP_221267321.1 2-oxo-tetronate isomerase -
  K6J60_RS09585 (CHBNIII7_18340) otnC 1892083..1892715 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  K6J60_RS09590 (CHBNIII7_18350) otnK 1892712..1893953 (-) 1242 WP_221267322.1 3-oxo-tetronate kinase -
  K6J60_RS09595 (CHBNIII7_18360) ltnD 1893956..1894861 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  K6J60_RS09600 (CHBNIII7_18370) - 1895032..1895790 (+) 759 WP_005647892.1 DeoR/GlpR family DNA-binding transcription regulator -
  K6J60_RS09605 (CHBNIII7_18380) comE1/comEA 1895837..1896184 (-) 348 WP_042603648.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J60_RS09610 (CHBNIII7_18390) ispH 1896353..1897297 (-) 945 WP_038440077.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J60_RS09615 (CHBNIII7_18400) lspA 1897294..1897809 (-) 516 WP_048951595.1 signal peptidase II -
  K6J60_RS09620 (CHBNIII7_18410) - 1897879..1899438 (-) 1560 WP_221267323.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12337.15 Da        Isoelectric Point: 8.0085

>NTDB_id=71227 K6J60_RS09605 WP_042603648.1 1895837..1896184(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGTKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71227 K6J60_RS09605 WP_042603648.1 1895837..1896184(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTACGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

99.13

0.574
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment