Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NPA43_RS14305 Genome accession   NZ_CP101833
Coordinates   2785621..2786262 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain NDY-10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2780621..2791262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS14270 (NPA43_14270) - 2781584..2782015 (+) 432 WP_099727092.1 Na(+)/H(+) antiporter subunit B -
  NPA43_RS14275 (NPA43_14275) - 2782015..2782356 (+) 342 WP_256498983.1 Na(+)/H(+) antiporter subunit C -
  NPA43_RS14280 (NPA43_14280) - 2782349..2783827 (+) 1479 WP_099727090.1 Na+/H+ antiporter subunit D -
  NPA43_RS14285 (NPA43_14285) - 2783834..2784313 (+) 480 WP_099727089.1 Na+/H+ antiporter subunit E -
  NPA43_RS14290 (NPA43_14290) - 2784310..2784594 (+) 285 WP_099727088.1 Na(+)/H(+) antiporter subunit F1 -
  NPA43_RS14295 (NPA43_14295) mnhG 2784578..2784952 (+) 375 WP_256499683.1 monovalent cation/H(+) antiporter subunit G -
  NPA43_RS14300 (NPA43_14300) - 2785208..2785597 (-) 390 WP_256498984.1 hotdog fold thioesterase -
  NPA43_RS14305 (NPA43_14305) comA 2785621..2786262 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  NPA43_RS14310 (NPA43_14310) comP 2786343..2788655 (-) 2313 WP_256498986.1 ATP-binding protein Regulator
  NPA43_RS14315 (NPA43_14315) comX 2788709..2788879 (-) 171 WP_099727085.1 competence pheromone ComX -
  NPA43_RS14320 (NPA43_14320) - 2788876..2789793 (-) 918 WP_099727084.1 polyprenyl synthetase family protein -
  NPA43_RS14325 (NPA43_14325) degQ 2789945..2790085 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NPA43_RS14330 (NPA43_14330) - 2790633..2790944 (+) 312 WP_230030804.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=712248 NPA43_RS14305 WP_058013793.1 2785621..2786262(-) (comA) [Bacillus pumilus strain NDY-10]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=712248 NPA43_RS14305 WP_058013793.1 2785621..2786262(-) (comA) [Bacillus pumilus strain NDY-10]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACAAACCAACAAGTGAAAATTATC
ATTTATACTGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCATGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAAGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTCTAATC
CTCAGAGAAGTGGAAAAAGGGTACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTACTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718