Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J60_RS03155 | Genome accession | NZ_AP018778 |
| Coordinates | 617349..617762 (+) | Length | 137 a.a. |
| NCBI ID | WP_005662593.1 | Uniprot ID | A0A0D0IEP2 |
| Organism | Haemophilus influenzae strain CHBN-III-7 isolate 15H01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 612349..622762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J60_RS03135 (CHBNIII7_05910) | - | 612837..615431 (-) | 2595 | WP_221267425.1 | penicillin-binding protein 1A | - |
| K6J60_RS03140 (CHBNIII7_05920) | comA | 615530..616327 (+) | 798 | WP_042601084.1 | pilus assembly protein PilM | Machinery gene |
| K6J60_RS03145 (CHBNIII7_05930) | comB | 616328..616834 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| K6J60_RS03150 (CHBNIII7_05940) | comC | 616831..617352 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| K6J60_RS03155 (CHBNIII7_05950) | comD | 617349..617762 (+) | 414 | WP_005662593.1 | pilus assembly protein PilP | Machinery gene |
| K6J60_RS03160 (CHBNIII7_05960) | comE | 617772..619109 (+) | 1338 | WP_005662594.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J60_RS03165 (CHBNIII7_05970) | - | 619122..619808 (+) | 687 | WP_118801578.1 | ComF family protein | - |
| K6J60_RS03170 (CHBNIII7_05980) | nfuA | 619884..620480 (+) | 597 | WP_105896093.1 | Fe-S biogenesis protein NfuA | - |
| K6J60_RS03175 (CHBNIII7_05990) | nudC | 620548..621342 (+) | 795 | WP_221267426.1 | NAD(+) diphosphatase | - |
| K6J60_RS03180 (CHBNIII7_06000) | - | 621378..621968 (+) | 591 | WP_048954881.1 | YjaG family protein | - |
| K6J60_RS03185 (CHBNIII7_06010) | - | 622108..622380 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15615.70 Da Isoelectric Point: 4.4355
>NTDB_id=71210 K6J60_RS03155 WP_005662593.1 617349..617762(+) (comD) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71210 K6J60_RS03155 WP_005662593.1 617349..617762(+) (comD) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae 86-028NP |
94.891 |
100 |
0.949 |