NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NOX82_RS05080	Genome accession	NZ_CP101752
Coordinates	1094713..1095585 (-)	Length	290 a.a.
NCBI ID	WP_256514310.1	Uniprot ID	-
Organism	Pseudomonas citronellolis strain C12
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1089713..1100585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NOX82_RS05030 (NOX82_05030)	-	1090143..1090316 (-)	174	WP_009617611.1	DUF3094 family protein	-
NOX82_RS05035 (NOX82_05035)	-	1090386..1091015 (-)	630	WP_009617612.1	DUF1780 domain-containing protein	-
NOX82_RS05040 (NOX82_05040)	-	1091148..1091564 (+)	417	WP_116422671.1	GNAT family N-acetyltransferase	-
NOX82_RS05045 (NOX82_05045)	-	1091568..1092038 (+)	471	WP_249917810.1	FAD/FMN-containing dehydrogenase	-
NOX82_RS05050 (NOX82_05050)	-	1092035..1092751 (+)	717	WP_256514304.1	energy-coupling factor ABC transporter permease	-
NOX82_RS05055 (NOX82_05055)	-	1092859..1093074 (+)	216	WP_074977495.1	hypothetical protein	-
NOX82_RS05060 (NOX82_05060)	-	1093081..1093356 (-)	276	WP_116422667.1	type II toxin-antitoxin system RelE/ParE family toxin	-
NOX82_RS05065 (NOX82_05065)	-	1093356..1093550 (-)	195	WP_116422666.1	stability determinant	-
NOX82_RS05070 (NOX82_05070)	yacG	1093825..1094034 (-)	210	WP_043272268.1	DNA gyrase inhibitor YacG	-
NOX82_RS05075 (NOX82_05075)	coaE	1094031..1094639 (-)	609	WP_256514308.1	dephospho-CoA kinase	-
NOX82_RS05080 (NOX82_05080)	pilD	1094713..1095585 (-)	873	WP_256514310.1	A24 family peptidase	Machinery gene
NOX82_RS05085 (NOX82_05085)	pilC	1095586..1096803 (-)	1218	WP_256514311.1	type II secretion system F family protein	Machinery gene
NOX82_RS05090 (NOX82_05090)	pilB	1096807..1098510 (-)	1704	WP_256514312.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NOX82_RS05100 (NOX82_05100)	-	1098733..1099218 (+)	486	WP_305880434.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NOX82_RS05105 (NOX82_05105)	-	1099278..1100465 (+)	1188	WP_256514313.1	hypothetical protein	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 31919.78 Da Isoelectric Point: 6.8225

                                >NTDB_id=711967 NOX82_RS05080 WP_256514310.1 1094713..1095585(-) (pilD) [Pseudomonas citronellolis strain C12]

MSVLDFLASHALAFVLCAALLGLLVGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQKATYNLVLPNSQCPHCGHEIH

AWENIPVVSYLALRGKCSACKAPISARYPLVEVATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDALV

LPLLWLGLIVNYFGLFTSLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG

AVLGVILLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR

Nucleotide

Download Length: 873 bp

                                >NTDB_id=711967 NOX82_RS05080 WP_256514310.1 1094713..1095585(-) (pilD) [Pseudomonas citronellolis strain C12]

ATGTCTGTACTCGACTTCCTGGCCAGCCACGCGCTGGCCTTTGTTTTATGCGCCGCCCTGCTCGGCCTTCTGGTCGGCAG

CTTCCTCAATGTGGTCATCCACCGCCTGCCGAAGATGATGGAGCTGGAATGGCAACAGCAGGCACGTGATGCGCTTTCCC

TGCCCCAGCCCGAGCAAAAGGCCACCTACAACCTGGTCCTGCCCAACTCCCAGTGCCCGCATTGCGGCCATGAGATCCAT

GCCTGGGAGAATATCCCCGTGGTCAGCTACCTTGCCCTACGCGGCAAGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG

TTATCCGCTGGTCGAGGTGGCCACTGCCCTGCTTTCCGGTTTCGTTGCCTGGCACTTCGGCTTTACCTGGCAGGCAGGGG

CCATGCTGTTGCTGACCTGGGGGCTGCTGGCCATGAGCCTGATCGACGTCGACCACCAGTTGTTGCCGGATGCGCTGGTT

CTACCGCTGCTCTGGCTGGGGTTGATCGTCAACTACTTCGGGCTTTTCACCAGCCTGGGCGATGCGCTCTGGGGCGCGGT

GTTCGGTTACCTGAGCCTATGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGTTATGGCGACT

TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATTCTGTTCTCGTCCCTGGTCGGG

GCCGTGCTGGGCGTCATTCTGCTGCGCCTGCGCAATGCCGAGACCAGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT

CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGTTTCCGGTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	58.123	95.517	0.555
pilD	Vibrio campbellii strain DS40M4	56.044	94.138	0.528
pilD	Acinetobacter baumannii D1279779	52.448	98.621	0.517
pilD	Acinetobacter nosocomialis M2	52.098	98.621	0.514
pilD	Neisseria gonorrhoeae MS11	48.929	96.552	0.472

Detailed information NTG0711967