Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NOX82_RS04935 Genome accession   NZ_CP101752
Coordinates   1069720..1071057 (-) Length   445 a.a.
NCBI ID   WP_256514291.1    Uniprot ID   A0AAW6PB36
Organism   Pseudomonas citronellolis strain C12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064720..1076057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS04900 (NOX82_04900) - 1064966..1065433 (-) 468 WP_256514287.1 PilX N-terminal domain-containing pilus assembly protein -
  NOX82_RS04905 (NOX82_04905) - 1065434..1066081 (-) 648 WP_256514288.1 PilW family protein -
  NOX82_RS04910 (NOX82_04910) pilV 1066078..1066554 (-) 477 WP_256514289.1 type IV pilus modification protein PilV -
  NOX82_RS31610 - 1066551..1067024 (-) 474 WP_305880433.1 GspH/FimT family pseudopilin -
  NOX82_RS04925 (NOX82_04925) - 1067174..1067686 (-) 513 WP_074977465.1 GspH/FimT family protein -
  NOX82_RS04930 (NOX82_04930) thiO 1067865..1068974 (+) 1110 WP_256514290.1 glycine oxidase ThiO -
  NOX82_RS04935 (NOX82_04935) pilR 1069720..1071057 (-) 1338 WP_256514291.1 sigma-54 dependent transcriptional regulator Regulator
  NOX82_RS04940 (NOX82_04940) pilS 1071069..1072658 (-) 1590 WP_256514292.1 PAS domain-containing sensor histidine kinase Regulator
  NOX82_RS04945 (NOX82_04945) - 1072651..1072881 (-) 231 WP_009617584.1 PP0621 family protein -
  NOX82_RS04950 (NOX82_04950) - 1073020..1074033 (-) 1014 WP_074977475.1 outer membrane protein assembly factor BamD -
  NOX82_RS04955 (NOX82_04955) rluD 1074180..1075139 (+) 960 WP_069861972.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NOX82_RS04960 (NOX82_04960) pgeF 1075136..1075864 (+) 729 WP_256514293.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49538.81 Da        Isoelectric Point: 5.6352

>NTDB_id=711965 NOX82_RS04935 WP_256514291.1 1069720..1071057(-) (pilR) [Pseudomonas citronellolis strain C12]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=711965 NOX82_RS04935 WP_256514291.1 1069720..1071057(-) (pilR) [Pseudomonas citronellolis strain C12]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGTGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGTCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGTGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGCGTGCCGCCGCTACGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGTGGCCTGGCTGCGGCCCAGGTCAGCCCCGAGGCCCTGGAGAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGGACGATGTCATCCAGCCCC
AGGACCTGCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCCGCGGCCCAGCG
ATTGGGTCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515