Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NOX82_RS04940 Genome accession   NZ_CP101752
Coordinates   1071069..1072658 (-) Length   529 a.a.
NCBI ID   WP_256514292.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain C12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066069..1077658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS04910 (NOX82_04910) pilV 1066078..1066554 (-) 477 WP_256514289.1 type IV pilus modification protein PilV -
  NOX82_RS31610 - 1066551..1067024 (-) 474 WP_305880433.1 GspH/FimT family pseudopilin -
  NOX82_RS04925 (NOX82_04925) - 1067174..1067686 (-) 513 WP_074977465.1 GspH/FimT family protein -
  NOX82_RS04930 (NOX82_04930) thiO 1067865..1068974 (+) 1110 WP_256514290.1 glycine oxidase ThiO -
  NOX82_RS04935 (NOX82_04935) pilR 1069720..1071057 (-) 1338 WP_256514291.1 sigma-54 dependent transcriptional regulator Regulator
  NOX82_RS04940 (NOX82_04940) pilS 1071069..1072658 (-) 1590 WP_256514292.1 PAS domain-containing sensor histidine kinase Regulator
  NOX82_RS04945 (NOX82_04945) - 1072651..1072881 (-) 231 WP_009617584.1 PP0621 family protein -
  NOX82_RS04950 (NOX82_04950) - 1073020..1074033 (-) 1014 WP_074977475.1 outer membrane protein assembly factor BamD -
  NOX82_RS04955 (NOX82_04955) rluD 1074180..1075139 (+) 960 WP_069861972.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NOX82_RS04960 (NOX82_04960) pgeF 1075136..1075864 (+) 729 WP_256514293.1 peptidoglycan editing factor PgeF -
  NOX82_RS04965 (NOX82_04965) - 1075965..1076129 (+) 165 WP_159458809.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58436.47 Da        Isoelectric Point: 7.0610

>NTDB_id=711966 NOX82_RS04940 WP_256514292.1 1071069..1072658(-) (pilS) [Pseudomonas citronellolis strain C12]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFTAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESEALDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLKEWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=711966 NOX82_RS04940 WP_256514292.1 1071069..1072658(-) (pilS) [Pseudomonas citronellolis strain C12]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGGGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GTTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGTTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCACCGCCGCGCTGCTGCTGCAGGGTCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGAGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCGGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAACGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAACAGCACACCCTGGTCTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTGACCGCCGGCATCGCCCACGAGATC
CGCAATCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCCGAAGCGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAATTGTCGCGGCGGCGCCAGG
CCGAGCCGCAACAGCTGGACCTCAAGGAGTGGCTGCAGCGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAGCTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGCTGAACCTGTTCCGCGACAGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAACAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.485

99.811

0.733