Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NPA28_RS16030 Genome accession   NZ_CP101718
Coordinates   3146655..3147299 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain S-5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141655..3152299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS15995 (NPA28_15995) - 3142848..3143279 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  NPA28_RS16000 (NPA28_16000) - 3143279..3143620 (+) 342 WP_256766350.1 Na(+)/H(+) antiporter subunit C -
  NPA28_RS16005 (NPA28_16005) - 3143613..3145094 (+) 1482 WP_106019476.1 Na+/H+ antiporter subunit D -
  NPA28_RS16010 (NPA28_16010) - 3145100..3145576 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  NPA28_RS16015 (NPA28_16015) - 3145576..3145860 (+) 285 WP_106019477.1 Na(+)/H(+) antiporter subunit F1 -
  NPA28_RS16020 (NPA28_16020) mnhG 3145844..3146218 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  NPA28_RS16025 (NPA28_16025) - 3146257..3146637 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  NPA28_RS16030 (NPA28_16030) comA 3146655..3147299 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  NPA28_RS16035 (NPA28_16035) comP 3147380..3149689 (-) 2310 WP_213417883.1 two-component system sensor histidine kinase ComP Regulator
  NPA28_RS16040 (NPA28_16040) comX 3149705..3149872 (-) 168 WP_044158946.1 competence pheromone ComX Regulator
  NPA28_RS16045 (NPA28_16045) comQ 3149856..3150761 (-) 906 WP_044160315.1 polyprenyl synthetase family protein Regulator
  NPA28_RS16050 (NPA28_16050) degQ 3150946..3151086 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  NPA28_RS16055 (NPA28_16055) - 3151547..3151915 (+) 369 WP_044158947.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=711782 NPA28_RS16030 WP_024122680.1 3146655..3147299(-) (comA) [Bacillus halotolerans strain S-5]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=711782 NPA28_RS16030 WP_024122680.1 3146655..3147299(-) (comA) [Bacillus halotolerans strain S-5]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCGGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986