Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPA28_RS02190 Genome accession   NZ_CP101718
Coordinates   429893..430843 (+) Length   316 a.a.
NCBI ID   WP_099043690.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424893..435843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS02165 (NPA28_02165) rapC 426282..427430 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  NPA28_RS02170 (NPA28_02170) phrC 427414..427536 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NPA28_RS02175 (NPA28_02175) - 427641..427733 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  NPA28_RS02180 (NPA28_02180) - 427880..427990 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  NPA28_RS02185 (NPA28_02185) - 428143..429507 (-) 1365 WP_069487496.1 aspartate kinase -
  NPA28_RS02190 (NPA28_02190) ceuB 429893..430843 (+) 951 WP_099043690.1 petrobactin ABC transporter permease YclN Machinery gene
  NPA28_RS02195 (NPA28_02195) yclO 430836..431783 (+) 948 WP_227534189.1 petrobactin ABC transporter permease YclO -
  NPA28_RS02200 (NPA28_02200) yclP 431777..432535 (+) 759 WP_024120218.1 petrobactin ABC transporter ATP-binding protein YclP -
  NPA28_RS02205 (NPA28_02205) - 432557..433510 (+) 954 WP_215510863.1 siderophore ABC transporter substrate-binding protein -
  NPA28_RS02210 (NPA28_02210) - 433558..434976 (-) 1419 WP_044161878.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35001.47 Da        Isoelectric Point: 9.8154

>NTDB_id=711730 NPA28_RS02190 WP_099043690.1 429893..430843(+) (ceuB) [Bacillus halotolerans strain S-5]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMMIAFVFALVGNFLFMKILEKIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=711730 NPA28_RS02190 WP_099043690.1 429893..430843(+) (ceuB) [Bacillus halotolerans strain S-5]
ATGAAGCTACGTTACTTATTTTTTCTGCTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATTTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTGA
TCGCGGGCATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCTTTAATGAAAATGAT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAAAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

100

0.541