Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NOV18_RS07375 Genome accession   NZ_CP101700
Coordinates   1581857..1584070 (+) Length   737 a.a.
NCBI ID   WP_054573477.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain MD9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576857..1589070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV18_RS07355 (NOV18_07355) - 1578722..1579345 (+) 624 WP_015269396.1 glutathione S-transferase -
  NOV18_RS07360 (NOV18_07360) - 1579490..1580422 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  NOV18_RS07365 (NOV18_07365) - 1580419..1581198 (+) 780 WP_015269397.1 ABC transporter permease -
  NOV18_RS07370 (NOV18_07370) - 1581208..1581714 (-) 507 Protein_1427 DUF2062 domain-containing protein -
  NOV18_RS07375 (NOV18_07375) comA 1581857..1584070 (+) 2214 WP_054573477.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NOV18_RS07380 (NOV18_07380) exbB 1584482..1585117 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NOV18_RS07385 (NOV18_07385) - 1585114..1585548 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  NOV18_RS07390 (NOV18_07390) lpxK 1585548..1586549 (+) 1002 WP_054572822.1 tetraacyldisaccharide 4'-kinase -
  NOV18_RS07395 (NOV18_07395) - 1586594..1586779 (+) 186 WP_011532874.1 Trm112 family protein -
  NOV18_RS07400 (NOV18_07400) kdsB 1586776..1587540 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NOV18_RS07405 (NOV18_07405) - 1587540..1588004 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  NOV18_RS07410 (NOV18_07410) murB 1588001..1589020 (+) 1020 WP_256381966.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79781.81 Da        Isoelectric Point: 10.3449

>NTDB_id=711603 NOV18_RS07375 WP_054573477.1 1581857..1584070(+) (comA) [Pseudomonas asiatica strain MD9]
MRTGMFALALGLLCLGFLPGLPSVGWLVLLAVAGGIGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQTALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGANLPLLLALIAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHVQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=711603 NOV18_RS07375 WP_054573477.1 1581857..1584070(+) (comA) [Pseudomonas asiatica strain MD9]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGGATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCATCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGACCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGACAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGAACTTACCGTTGTTGCTGGCGCTGATTGCCGTACTGTTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCCTGGGTCAGCCTGGCCGTGCTGCCATTGGCATTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCACTGCTCTGGCTGGCGGGAGGTTTGCTCGATGTGCTCTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGTTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGCGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAG
TGGCGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGTGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.306

97.693

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.376