Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NOV18_RS07380 Genome accession   NZ_CP101700
Coordinates   1584482..1585117 (+) Length   211 a.a.
NCBI ID   WP_051099753.1    Uniprot ID   A0A0E9ZJ72
Organism   Pseudomonas asiatica strain MD9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579482..1590117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV18_RS07360 (NOV18_07360) - 1579490..1580422 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  NOV18_RS07365 (NOV18_07365) - 1580419..1581198 (+) 780 WP_015269397.1 ABC transporter permease -
  NOV18_RS07370 (NOV18_07370) - 1581208..1581714 (-) 507 Protein_1427 DUF2062 domain-containing protein -
  NOV18_RS07375 (NOV18_07375) comA 1581857..1584070 (+) 2214 WP_054573477.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NOV18_RS07380 (NOV18_07380) exbB 1584482..1585117 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NOV18_RS07385 (NOV18_07385) - 1585114..1585548 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  NOV18_RS07390 (NOV18_07390) lpxK 1585548..1586549 (+) 1002 WP_054572822.1 tetraacyldisaccharide 4'-kinase -
  NOV18_RS07395 (NOV18_07395) - 1586594..1586779 (+) 186 WP_011532874.1 Trm112 family protein -
  NOV18_RS07400 (NOV18_07400) kdsB 1586776..1587540 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NOV18_RS07405 (NOV18_07405) - 1587540..1588004 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  NOV18_RS07410 (NOV18_07410) murB 1588001..1589020 (+) 1020 WP_256381966.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.11 Da        Isoelectric Point: 7.3616

>NTDB_id=711604 NOV18_RS07380 WP_051099753.1 1584482..1585117(+) (exbB) [Pseudomonas asiatica strain MD9]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=711604 NOV18_RS07380 WP_051099753.1 1584482..1585117(+) (exbB) [Pseudomonas asiatica strain MD9]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9ZJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825