Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J67_RS08830 Genome accession   NZ_AP018776
Coordinates   1805132..1805479 (-) Length   115 a.a.
NCBI ID   WP_050822911.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800132..1810479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS08810 (CHBNIII5_16860) bioB 1800521..1801522 (-) 1002 WP_050822908.1 biotin synthase BioB -
  K6J67_RS08815 (CHBNIII5_16870) thiQ 1801647..1802282 (-) 636 WP_050822909.1 thiamine ABC transporter ATP-binding protein -
  K6J67_RS08820 (CHBNIII5_16880) thiP 1802266..1803882 (-) 1617 WP_050822910.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J67_RS08825 (CHBNIII5_16890) thiB 1803887..1804885 (-) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  K6J67_RS08830 (CHBNIII5_16900) comE1/comEA 1805132..1805479 (-) 348 WP_050822911.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J67_RS08835 (CHBNIII5_16910) ispH 1805648..1806592 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J67_RS08840 (CHBNIII5_16920) lspA 1806589..1807104 (-) 516 WP_050822912.1 signal peptidase II -
  K6J67_RS08845 (CHBNIII5_16930) - 1807174..1808733 (-) 1560 WP_050822913.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12478.40 Da        Isoelectric Point: 9.0428

>NTDB_id=71157 K6J67_RS08830 WP_050822911.1 1805132..1805479(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MKLMKTLFTSFVLCGSLAAGSTFAENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71157 K6J67_RS08830 WP_050822911.1 1805132..1805479(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

81.25

97.391

0.791
  comEA/comE1 Glaesserella parasuis strain SC1401

57.944

93.043

0.539
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment