Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NO220_RS16720 Genome accession   NZ_CP101661
Coordinates   3384384..3385769 (-) Length   461 a.a.
NCBI ID   WP_043867470.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3379384..3390769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS16685 (NO220_16685) flgL 3379559..3380476 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NO220_RS16690 (NO220_16690) flgK 3380488..3382005 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  NO220_RS16695 (NO220_16695) - 3382021..3382503 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NO220_RS16700 (NO220_16700) flgM 3382518..3382784 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NO220_RS16705 (NO220_16705) - 3382854..3383273 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  NO220_RS16710 (NO220_16710) comFC 3383347..3384036 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  NO220_RS16715 (NO220_16715) - 3384042..3384326 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NO220_RS16720 (NO220_16720) comFA 3384384..3385769 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  NO220_RS16725 (NO220_16725) - 3385877..3386725 (-) 849 WP_043867471.1 DegV family protein -
  NO220_RS16730 (NO220_16730) degU 3386823..3387512 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NO220_RS16735 (NO220_16735) degS 3387589..3388752 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  NO220_RS16740 (NO220_16740) - 3388975..3389622 (+) 648 WP_043867472.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.09 Da        Isoelectric Point: 10.0979

>NTDB_id=711462 NO220_RS16720 WP_043867470.1 3384384..3385769(-) (comFA) [Bacillus amyloliquefaciens strain B408]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=711462 NO220_RS16720 WP_043867470.1 3384384..3385769(-) (comFA) [Bacillus amyloliquefaciens strain B408]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(326-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631