Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NO220_RS16710 Genome accession   NZ_CP101661
Coordinates   3383347..3384036 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378347..3389036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS16675 (NO220_16675) fliW 3378438..3378869 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  NO220_RS16680 (NO220_16680) - 3378899..3379468 (-) 570 WP_024085861.1 DUF6470 family protein -
  NO220_RS16685 (NO220_16685) flgL 3379559..3380476 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NO220_RS16690 (NO220_16690) flgK 3380488..3382005 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  NO220_RS16695 (NO220_16695) - 3382021..3382503 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NO220_RS16700 (NO220_16700) flgM 3382518..3382784 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NO220_RS16705 (NO220_16705) - 3382854..3383273 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  NO220_RS16710 (NO220_16710) comFC 3383347..3384036 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  NO220_RS16715 (NO220_16715) - 3384042..3384326 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NO220_RS16720 (NO220_16720) comFA 3384384..3385769 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  NO220_RS16725 (NO220_16725) - 3385877..3386725 (-) 849 WP_043867471.1 DegV family protein -
  NO220_RS16730 (NO220_16730) degU 3386823..3387512 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NO220_RS16735 (NO220_16735) degS 3387589..3388752 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=711461 NO220_RS16710 WP_196769287.1 3383347..3384036(-) (comFC) [Bacillus amyloliquefaciens strain B408]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=711461 NO220_RS16710 WP_196769287.1 3383347..3384036(-) (comFC) [Bacillus amyloliquefaciens strain B408]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603