Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NO220_RS11920 Genome accession   NZ_CP101661
Coordinates   2462845..2463915 (-) Length   356 a.a.
NCBI ID   WP_043867287.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B408     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2457845..2468915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NO220_RS11870 (NO220_11870) sipW 2457905..2458489 (-) 585 WP_012117977.1 signal peptidase I SipW -
  NO220_RS11875 (NO220_11875) tapA 2458461..2459132 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  NO220_RS11880 (NO220_11880) - 2459391..2459720 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  NO220_RS11885 (NO220_11885) - 2459760..2459939 (-) 180 WP_003153093.1 YqzE family protein -
  NO220_RS11890 (NO220_11890) comGG 2459996..2460373 (-) 378 WP_043867284.1 competence type IV pilus minor pilin ComGG Machinery gene
  NO220_RS11895 (NO220_11895) comGF 2460374..2460769 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  NO220_RS11900 (NO220_11900) comGE 2460783..2461097 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  NO220_RS11905 (NO220_11905) comGD 2461081..2461518 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  NO220_RS11910 (NO220_11910) comGC 2461508..2461816 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NO220_RS11915 (NO220_11915) comGB 2461821..2462858 (-) 1038 WP_043867286.1 competence type IV pilus assembly protein ComGB Machinery gene
  NO220_RS11920 (NO220_11920) comGA 2462845..2463915 (-) 1071 WP_043867287.1 competence type IV pilus ATPase ComGA Machinery gene
  NO220_RS11925 (NO220_11925) - 2464113..2465063 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  NO220_RS11930 (NO220_11930) - 2465209..2466510 (+) 1302 WP_043867288.1 hemolysin family protein -
  NO220_RS11935 (NO220_11935) - 2466548..2467378 (-) 831 WP_032856863.1 STAS domain-containing protein -
  NO220_RS11945 (NO220_11945) - 2467584..2467964 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NO220_RS11950 (NO220_11950) - 2468201..2468446 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40502.82 Da        Isoelectric Point: 9.4729

>NTDB_id=711442 NO220_RS11920 WP_043867287.1 2462845..2463915(-) (comGA) [Bacillus amyloliquefaciens strain B408]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEESCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=711442 NO220_RS11920 WP_043867287.1 2462845..2463915(-) (comGA) [Bacillus amyloliquefaciens strain B408]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTCTTTACCGGCCCGACCGGCTCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATACTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAGCTGTTCCGTGTACTGCCGGATGTACA
GGCAGACCCGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACAACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374