Detailed information NTG0711242

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: NN994_RS08655
• Genome accession: NZ_CP101646
• Coordinates: 1659320..1660420 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain UCCSt95
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1654320..1665420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NN994_RS08610 (NN994_08615)	-	1654644..1654919 (-)	276	WP_011681681.1	hypothetical protein	-
NN994_RS08615 (NN994_08620)	-	1654931..1655129 (-)	199	Protein_1636	helix-turn-helix transcriptional regulator	-
NN994_RS08620 (NN994_08625)	-	1655378..1656571 (-)	1194	WP_014608740.1	acetate kinase	-
NN994_RS08625 (NN994_08630)	comYH	1656627..1657583 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
NN994_RS08630 (NN994_08635)	comGG	1657628..1657945 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
NN994_RS08635 (NN994_08640)	comYF	1657923..1658360 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
NN994_RS08640 (NN994_08645)	comGE	1658344..1658637 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
NN994_RS08645 (NN994_08650)	comYD	1658609..1659037 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
NN994_RS08650 (NN994_08655)	comYC	1658997..1659323 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
NN994_RS08655 (NN994_08660)	comYB	1659320..1660420 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
NN994_RS08660 (NN994_08665)	comGA/cglA/cilD	1660302..1661243 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
NN994_RS08665 (NN994_08670)	-	1661324..1661686 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=711242 NN994_RS08655 WP_120764773.1 1659320..1660420(-) (comYB) [Streptococcus thermophilus strain UCCSt95]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=711242 NN994_RS08655 WP_120764773.1 1659320..1660420(-) (comYB) [Streptococcus thermophilus strain UCCSt95]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413