Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K6J64_RS08860 Genome accession   NZ_AP018775
Coordinates   1802137..1802484 (-) Length   115 a.a.
NCBI ID   WP_041174638.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-4 isolate 12H35     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797137..1807484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J64_RS08840 (CHBNIII4_16860) bioB 1797527..1798528 (-) 1002 WP_014550962.1 biotin synthase BioB -
  K6J64_RS08845 (CHBNIII4_16880) thiQ 1798641..1799287 (-) 647 Protein_1700 thiamine ABC transporter ATP-binding protein -
  K6J64_RS08850 (CHBNIII4_16890) thiP 1799271..1800887 (-) 1617 WP_014550964.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  K6J64_RS08855 (CHBNIII4_16900) thiB 1800892..1801890 (-) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  K6J64_RS08860 (CHBNIII4_16910) comE1/comEA 1802137..1802484 (-) 348 WP_041174638.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6J64_RS08865 (CHBNIII4_16920) ispH 1802653..1803597 (-) 945 WP_014550967.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6J64_RS08870 (CHBNIII4_16930) lspA 1803594..1804109 (-) 516 WP_014550968.1 signal peptidase II -
  K6J64_RS08875 (CHBNIII4_16940) - 1804179..1805738 (-) 1560 WP_014550969.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12453.34 Da        Isoelectric Point: 8.0084

>NTDB_id=71122 K6J64_RS08860 WP_041174638.1 1802137..1802484(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAAAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71122 K6J64_RS08860 WP_041174638.1 1802137..1802484(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCAGCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

80.357

97.391

0.783
  comEA/comE1 Glaesserella parasuis strain SC1401

58.879

93.043

0.548
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment