Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J64_RS02900 | Genome accession | NZ_AP018775 |
| Coordinates | 572477..572890 (+) | Length | 137 a.a. |
| NCBI ID | WP_014550413.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-III-4 isolate 12H35 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 567477..577890
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J64_RS02880 (CHBNIII4_05520) | - | 567965..570559 (-) | 2595 | WP_014550411.1 | penicillin-binding protein 1A | - |
| K6J64_RS02885 (CHBNIII4_05530) | comA | 570658..571455 (+) | 798 | WP_048946796.1 | pilus assembly protein PilM | Machinery gene |
| K6J64_RS02890 (CHBNIII4_05540) | comB | 571456..571962 (+) | 507 | WP_014550412.1 | competence protein ComB | Machinery gene |
| K6J64_RS02895 (CHBNIII4_05550) | comC | 571959..572480 (+) | 522 | WP_005662592.1 | competence protein ComC | Machinery gene |
| K6J64_RS02900 (CHBNIII4_05560) | comD | 572477..572890 (+) | 414 | WP_014550413.1 | pilus assembly protein PilP | Machinery gene |
| K6J64_RS02905 (CHBNIII4_05570) | comE | 572900..574237 (+) | 1338 | WP_014550414.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K6J64_RS02910 (CHBNIII4_05580) | - | 574250..574936 (+) | 687 | WP_014550415.1 | ComF family protein | - |
| K6J64_RS02915 (CHBNIII4_05590) | nfuA | 575012..575608 (+) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| K6J64_RS02920 (CHBNIII4_05600) | nudC | 575675..576469 (+) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| K6J64_RS02925 (CHBNIII4_05610) | - | 576505..577095 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| K6J64_RS02930 (CHBNIII4_05620) | - | 577235..577507 (+) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15630.67 Da Isoelectric Point: 4.2602
>NTDB_id=71106 K6J64_RS02900 WP_014550413.1 572477..572890(+) (comD) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISED
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISED
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=71106 K6J64_RS02900 WP_014550413.1 572477..572890(+) (comD) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTGAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTGAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.161 |
100 |
0.942 |
| comD | Haemophilus influenzae 86-028NP |
93.431 |
100 |
0.934 |