Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   K6J64_RS02890 Genome accession   NZ_AP018775
Coordinates   571456..571962 (+) Length   168 a.a.
NCBI ID   WP_014550412.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-4 isolate 12H35     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566456..576962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J64_RS02870 (CHBNIII4_05500) - 566562..566891 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J64_RS02875 (CHBNIII4_05510) - 567044..567889 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J64_RS02880 (CHBNIII4_05520) - 567965..570559 (-) 2595 WP_014550411.1 penicillin-binding protein 1A -
  K6J64_RS02885 (CHBNIII4_05530) comA 570658..571455 (+) 798 WP_048946796.1 pilus assembly protein PilM Machinery gene
  K6J64_RS02890 (CHBNIII4_05540) comB 571456..571962 (+) 507 WP_014550412.1 competence protein ComB Machinery gene
  K6J64_RS02895 (CHBNIII4_05550) comC 571959..572480 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K6J64_RS02900 (CHBNIII4_05560) comD 572477..572890 (+) 414 WP_014550413.1 pilus assembly protein PilP Machinery gene
  K6J64_RS02905 (CHBNIII4_05570) comE 572900..574237 (+) 1338 WP_014550414.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J64_RS02910 (CHBNIII4_05580) - 574250..574936 (+) 687 WP_014550415.1 ComF family protein -
  K6J64_RS02915 (CHBNIII4_05590) nfuA 575012..575608 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  K6J64_RS02920 (CHBNIII4_05600) nudC 575675..576469 (+) 795 WP_014550416.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19684.56 Da        Isoelectric Point: 7.4218

>NTDB_id=71104 K6J64_RS02890 WP_014550412.1 571456..571962(+) (comB) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MSMNLLPWRTYQHQKCLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKNTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=71104 K6J64_RS02890 WP_014550412.1 571456..571962(+) (comB) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGTGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAAATACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

98.214

100

0.982
  comB Haemophilus influenzae Rd KW20

98.214

100

0.982

Multiple sequence alignment