Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6M15_RS07715 Genome accession   NZ_CP116692
Coordinates   1544086..1546191 (+) Length   701 a.a.
NCBI ID   WP_174009118.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain A74a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539086..1551191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M15_RS07700 (G6M15_07700) - 1539342..1539686 (-) 345 WP_174008679.1 hypothetical protein -
  G6M15_RS07705 (G6M15_07705) mfd 1540086..1543583 (-) 3498 WP_174008680.1 transcription-repair coupling factor -
  G6M15_RS07710 (G6M15_07710) - 1543587..1543898 (-) 312 WP_010971859.1 succinate dehydrogenase assembly factor 2 -
  G6M15_RS07715 (G6M15_07715) recG 1544086..1546191 (+) 2106 WP_174009118.1 ATP-dependent DNA helicase RecG Machinery gene
  G6M15_RS07720 (G6M15_07720) - 1546204..1546476 (+) 273 WP_080808398.1 hypothetical protein -
  G6M15_RS07725 (G6M15_07725) - 1546504..1546794 (-) 291 WP_174008681.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G6M15_RS07730 (G6M15_07730) - 1546791..1547039 (-) 249 WP_407061425.1 CopG family ribbon-helix-helix protein -
  G6M15_RS07735 (G6M15_07735) - 1547156..1547824 (-) 669 WP_174008682.1 DUF502 domain-containing protein -
  G6M15_RS07740 (G6M15_07740) - 1547838..1548341 (-) 504 WP_174008683.1 GNAT family N-acetyltransferase -
  G6M15_RS07745 (G6M15_07745) glmS 1548338..1550164 (-) 1827 WP_174008684.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76339.97 Da        Isoelectric Point: 7.1161

>NTDB_id=710783 G6M15_RS07715 WP_174009118.1 1544086..1546191(+) (recG) [Agrobacterium tumefaciens strain A74a]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSAKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDGVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGTNIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=710783 G6M15_RS07715 WP_174009118.1 1544086..1546191(+) (recG) [Agrobacterium tumefaciens strain A74a]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTTT
GGCAAAACTGCTGAGCCGGGAAAGCGCCGACGACACCCGCGTGATCGACCTCCTGTTCCACGCGCCATCAAACGTCATCG
ACCGGCGTAACCGCCCGGGCATCGCGCTTGCCGCCCCCGGCGCCATTGTCACCATTCAGGGACGCGTCGACCGTCACCAA
CCGCCACCCGCAGGCAATCGCTCCGCCCCCTATCGCGTGTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCCCTGCCAGTCGATGAAGAGGTGCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTACACCCGGATTTCATGGTGAAGCTTTCCGAGGCAGAGAACCTGCCGCTGGTGGAAGCGGTT
TACCCCATGACCGCAGGTCTTTCCGCAAAGGTGCTGCGGCGGGCGATCGAAGGTGGGCTGTCGAAGCTGCCGGTCTTCCC
GGAGTGGATCGACGAGACGCTCAAGACCCGGCAGGGTTTCGGCGATGTCGCATCGAGCTTCCGCGAGCTGCATGACCCGC
GCGACAGCGCAGATATCGACCCGCAGGCCCCGGCGCGCAGACGGCTCGCCTATGACGAATTCCTCGCCGGGCAGCTATCA
CTGGCGCTGGTGCGCCAAAGACTGCGCAAGGTGGCAGGCCAGCCGATCCGCGCCAAGGGTGATATCGCCGCAAAGATCCT
GTCGCAGCTGCCCTTCTCGCTGACGGCAAGCCAAAGCGCGGCGGTGAAGGATATCCTGACCGATATGGCCGGCGAAGACC
GCATGTTGCGGCTGCTTCAGGGTGATGTCGGCGCCGGCAAGACGCTGGTGGCGCTGATGGCCATGGCGACAGCAGTGGAG
GCCGGCGGACAGGCGGTGCTGATGGCGCCCACCGAAATCCTTGCCCGCCAGCACTTCGCCACCATCTCGAAACTCGCTCA
GGCGGCCGGCATCACCGTAGAGGTCCTGACCGGCCGCACCAAGGGCAAGGAACGCCGCGAGATCGAGGAGCGTGTGGCGT
CAGGCGAAGCACAGATCGTCATCGGCACGCACGCACTGTTTCAGGACGGCGTGAGTTACAAAAACCTCGTACTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTGCACCAGCGCCTGCGCCTCACCGCCAAGGGCATCACGCCCCATATGCTGGTCAT
GACCGCCACGCCCATTCCGCGCACGCTGGTCCTGGCCGCTTTCGGCGACATGGATGTCTCCAAGCTCACCGAAAAACCGG
CCGGCCGCAAACCCATCCAGACCGTGACCATCCCGACCGAGCGCATCGGCGATATTGTCGAGCGTCTGCGTGCGGCGCTG
AAGGACGGCAAGAAGGCCTATTGGATCTGCCCGCTGGTGGAAGAGACGGAAGAATCCGACCTGATGTCGGCCGAGGAACG
GCATGCGGTTCTGTCGCAGATGCTCGGTACAAATATTGGTCTCATCCATGGCCGCATGAGCGGCCCGGAAAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGCGAAACCCGGCTGCTGGTGGCGACAACGGTGGTGGAGGTGGGCGTCGACGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTGCACCAGTTGCGCGGTCGGGTTGGACGCGG
CGACGAGGCCTCCACCTGTATCCTGCTCTATAAGGGGCCGCTCAGCGAAAATGGCCGCGCCCGGCTTTCCATCCTGCGCG
ACAGCGAAGACGGCTTCCTGATCGCGGAAGAGGATCTGAAGCTGCGCGGAGAAGGCGAACTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGCTTTCGTATCGCCAGCCTCGAAGCCCATGCCGACCTTCTGGAAATCGCCCGCAAGGATGCCGCCTATGT
CATCGAGCGCGATCCCGAACTCACAGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-180)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

DEAD/DEAH box helicase (DEAD)

(275-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.319

94.722

0.401
  recG/mmsA Streptococcus pneumoniae R6

40.087

97.86

0.392
  recG/mmsA Streptococcus pneumoniae R36A

40.087

97.86

0.392
  recG Bacillus subtilis subsp. subtilis str. 168

38.696

98.431

0.381