Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   NY151_RS02225 Genome accession   NZ_CP116614
Coordinates   492378..494474 (+) Length   698 a.a.
NCBI ID   WP_021665932.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain ATCC 49417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 487378..499474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY151_RS02205 (NY151_02205) - 488526..489995 (-) 1470 WP_077083538.1 purple acid phosphatase family protein -
  NY151_RS02210 (NY151_02210) - 489998..490591 (-) 594 WP_004584828.1 hypothetical protein -
  NY151_RS02215 (NY151_02215) yihA 490692..491297 (+) 606 WP_077083539.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NY151_RS02220 (NY151_02220) galE 491307..492335 (+) 1029 WP_077083540.1 UDP-glucose 4-epimerase GalE -
  NY151_RS02225 (NY151_02225) recG/mmsA 492378..494474 (+) 2097 WP_021665932.1 ATP-dependent DNA helicase RecG Machinery gene
  NY151_RS02230 (NY151_02230) - 494474..495244 (+) 771 WP_005873802.1 HAD family hydrolase -
  NY151_RS02235 (NY151_02235) - 495339..496793 (-) 1455 WP_005873799.1 leucine-rich repeat domain-containing protein -
  NY151_RS02240 (NY151_02240) - 497221..498801 (+) 1581 WP_043894755.1 sialidase family protein -
  NY151_RS02245 (NY151_02245) - 498963..499055 (+) 93 WP_125026600.1 DUF1661 domain-containing protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78982.06 Da        Isoelectric Point: 8.6433

>NTDB_id=710524 NY151_RS02225 WP_021665932.1 492378..494474(+) (recG/mmsA) [Porphyromonas gingivalis strain ATCC 49417]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKRVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=710524 NY151_RS02225 WP_021665932.1 492378..494474(+) (recG/mmsA) [Porphyromonas gingivalis strain ATCC 49417]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCTTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTATTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAGGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGTACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATCGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCTGCAGGCCGG
CAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCGCGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)

DEAD/DEAH box helicase (DEAD)

(272-431)

RecG wedge domain (RecG_wedge)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

40.822

97.564

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.822

97.564

0.398
  recG Neisseria meningitidis strain C311

41.73

94.413

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.71

97.708

0.378