Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   NY149_RS08865 Genome accession   NZ_CP116613
Coordinates   2052855..2054951 (-) Length   698 a.a.
NCBI ID   WP_271912340.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain HG1691old     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047855..2059951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY149_RS11725 - 2048272..2048364 (-) 93 WP_234239977.1 DUF1661 domain-containing protein -
  NY149_RS08845 (NY149_08845) - 2048333..2048461 (+) 129 WP_234239975.1 DUF1661 domain-containing protein -
  NY149_RS08850 (NY149_08850) - 2048526..2050106 (-) 1581 WP_257120446.1 sialidase family protein -
  NY149_RS08855 (NY149_08855) - 2050533..2051990 (+) 1458 WP_097552597.1 leucine-rich repeat domain-containing protein -
  NY149_RS08860 (NY149_08860) - 2052085..2052855 (-) 771 WP_097637685.1 HAD family hydrolase -
  NY149_RS08865 (NY149_08865) recG/mmsA 2052855..2054951 (-) 2097 WP_271912340.1 ATP-dependent DNA helicase RecG Machinery gene
  NY149_RS08870 (NY149_08870) galE 2054994..2056022 (-) 1029 WP_021663083.1 UDP-glucose 4-epimerase GalE -
  NY149_RS08875 (NY149_08875) yihA 2056032..2056637 (-) 606 WP_004584829.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NY149_RS08880 (NY149_08880) - 2056738..2057331 (+) 594 WP_005873808.1 hypothetical protein -
  NY149_RS08885 (NY149_08885) - 2057334..2058803 (+) 1470 WP_077085118.1 purple acid phosphatase family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78891.98 Da        Isoelectric Point: 8.4175

>NTDB_id=710511 NY149_RS08865 WP_271912340.1 2052855..2054951(-) (recG/mmsA) [Porphyromonas gingivalis strain HG1691old]
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKR
LTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMG
LGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLER
KARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLAMLLALDNGCQAC
LMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHR
FGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDSDMAPVFRFLRSQLAAGR
QVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATV
MVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQ
ISLRIANPARDTELIALSRSIAEQLLEHDPELRHPDNQMLALRLNKLFPKEEDWSVIS

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=710511 NY149_RS08865 WP_271912340.1 2052855..2054951(-) (recG/mmsA) [Porphyromonas gingivalis strain HG1691old]
ATGGATATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGA
AGTACGTACCTATCTGGATCTTCTCCATTATTTCCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGA
TACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGG
CTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACT
GCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCTGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAG
ATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGG
CTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCC
TTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGC
TGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGT
AAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTATTCAATACATTCTACAAGGAACATCTGCCTTTCGA
ACTGACCGGTGCGCAGAAAAAGGTGGTACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGC
AGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGGCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGC
CTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGT
CGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCG
TCGTCGGCACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGA
TTCGGCGTACAGCAGCGAGCCCGCTTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCC
CATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATTGACGAATTGCCTCCCGGCCGTAAGC
CCATACAGACGCTCCACCACTTCGACAGCGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGG
CAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTT
CTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGG
ACTTCGTCAGCGGTCGCTCTCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTG
ATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCA
AAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCACGCCGGCGTATTCAGGTGATGGTGGAGACGAACG
ATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAG
ATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGA
GCACGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACT
GGAGTGTCATAAGCTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-431)

RecG wedge domain (RecG_wedge)

(8-157)

Helicase conserved C-terminal domain (Helicase_C)

(477-585)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(612-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

41.116

97.564

0.401
  recG/mmsA Streptococcus pneumoniae R36A

41.116

97.564

0.401
  recG Neisseria meningitidis strain C311

41.73

94.413

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.71

97.708

0.378