Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NM966_RS16990 Genome accession   NZ_CP101506
Coordinates   3242583..3243272 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain B12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237583..3248272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS16955 (NM966_16900) - 3237669..3238151 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NM966_RS16960 (NM966_16905) flgM 3238170..3238433 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NM966_RS16965 (NM966_16910) - 3238513..3238932 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NM966_RS16970 (NM966_16915) - 3238989..3239711 (-) 723 WP_231947217.1 ComF family protein -
  NM966_RS16975 (NM966_16920) - 3239672..3239965 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  NM966_RS16980 (NM966_16925) comFA 3240030..3241157 (-) 1128 WP_046526682.1 DEAD/DEAH box helicase Machinery gene
  NM966_RS16985 (NM966_16930) - 3241529..3242371 (-) 843 WP_060832692.1 DegV family protein -
  NM966_RS16990 (NM966_16935) degU 3242583..3243272 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NM966_RS16995 (NM966_16940) degS 3243337..3244512 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  NM966_RS17000 (NM966_16945) - 3244734..3245402 (+) 669 WP_017357860.1 YigZ family protein -
  NM966_RS17005 (NM966_16950) - 3245387..3246484 (+) 1098 WP_007499958.1 LCP family protein -
  NM966_RS17010 (NM966_16955) - 3246522..3247589 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=710317 NM966_RS16990 WP_008348273.1 3242583..3243272(-) (degU) [Bacillus altitudinis strain B12]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=710317 NM966_RS16990 WP_008348273.1 3242583..3243272(-) (degU) [Bacillus altitudinis strain B12]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACACGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996