Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NM966_RS08770 Genome accession   NZ_CP101506
Coordinates   1729230..1729610 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain B12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1724230..1734610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS08760 (NM966_08730) - 1725953..1726861 (+) 909 WP_048001486.1 serine protease -
  NM966_RS08765 (NM966_08735) - 1727008..1729002 (+) 1995 WP_048001485.1 glycosyltransferase family 39 protein -
  NM966_RS08770 (NM966_08740) nucA/comI 1729230..1729610 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NM966_RS08775 (NM966_08745) - 1729754..1730602 (+) 849 WP_017359585.1 STAS domain-containing protein -
  NM966_RS08780 (NM966_08750) - 1730635..1731177 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  NM966_RS08785 (NM966_08755) - 1731474..1731917 (+) 444 WP_008343821.1 hypothetical protein -
  NM966_RS08790 (NM966_08760) lexA 1731965..1732585 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  NM966_RS08795 (NM966_08765) yneA 1732745..1733056 (+) 312 WP_191219236.1 cell division suppressor protein YneA -
  NM966_RS08800 (NM966_08770) - 1733074..1733721 (+) 648 WP_017359583.1 recombinase family protein -
  NM966_RS08805 (NM966_08775) - 1733791..1734021 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=710295 NM966_RS08770 WP_224559893.1 1729230..1729610(+) (nucA/comI) [Bacillus altitudinis strain B12]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=710295 NM966_RS08770 WP_224559893.1 1729230..1729610(+) (nucA/comI) [Bacillus altitudinis strain B12]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556